BtaINT0121631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039573 | RABL6
Description
Bos taurus RAB, member RAS oncogene family-like 6 (RABL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001076817]
Coordinates
chr11:106353415-106354318:-
Coord C1 exon
chr11:106354266-106354318
Coord A exon
chr11:106353507-106354265
Coord C2 exon
chr11:106353415-106353506
Length
759 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTTTGGTTCCCCGTCCGCAGGCG
3' ss Score
9.85
Exon sequences
Seq C1 exon
GAAAATGCAAGAAGCGAGGTGACGGCCTGAAGATGGAGAACGACCCCCAGGAG
Seq A exon
GTGAGCTGGTCCGTCCTGCGTGGCCCCTACTTCACGGGGCGGTTGTGAGCAGGCATCTGTGCTTCAGCCCCTCTGCCCGCCTGGCCCGGCCCTCCCGAGGACTGCATCTGCTGGCGCTGGAGGGACGCAGTGGCCACTCCTGAGCAGCCTGGAGTGGCGGACTGACCCGAGCTGCTGCTCACGTCCGTGACCCCACTTGGGGCTGCAGTGGCCTGGGAGGTGTTCATGTGGAGAGCCCACATCTCACTCCTGGCGCAGAGGCCGGGCCCGTAAAGGCACAGGCGCGCCTGTGGGTGTAGCTGGGCACACATGGGCCCCCTGTGGCTCCACGAGGACCCCACACGACTGGCAGCGCTCCTGACCTGTGACGGGCTCTGCCAGCTTCGAGGGCCTTCTGTTCACGGCTTCCTGACAGCGTGCCGGAAGGTTCCGTGAGCGCCGGCCCAGGTCCCCAACCTTCATGGACACGTTGCACTGCCCCAGCACCACAGCGTCCCTGGTGTGGGTTCTGGAATGTTCTCTGGCTGCGTCCTCGGGTCTGGGACGCGCTTCAGCTCACTAGTGCCCACGGCAGCACCTGTGAGCCCCACACGTAGGACCAGCAGGCAGTGCAGGCCCTGGTCTGAGGGCAGGCCGTGTGGCCGCGCCAGTTAGCCTCGTATTGACTTTTTTCCTCCCCAAAACAAAAACACTTGATGTCTTTTGGGTACTCACGTGTGGGTCATGGCCCGTTTCTGAGGTTTGGTTCCCCGTCCGCAG
Seq C2 exon
GCGGAGTCCGAGATGGCCCTGGACGCGGAGTTCCTGGACGTGTACAAGAACTGCAATGGGGTGGTCATGATGTTTGACATCACCAAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039573:ENSBTAT00000001237:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(12.6=100)
A:
NA
C2:
PF084778=Miro=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development