MmuINT0022522 @ mm9
Intron Retention
Gene
ENSMUSG00000015087 | B230208H17Rik
Description
RIKEN cDNA B230208H17 gene [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25451953-25453717:-
Coord C1 exon
chr2:25453665-25453717
Coord A exon
chr2:25452045-25453664
Coord C2 exon
chr2:25451953-25452044
Length
1620 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCTTCCTTCTGTTTCTAGGCA
3' ss Score
12.16
Exon sequences
Seq C1 exon
GAAAGTGTAAAAAACGAGGAGATGGCTTGAAGACGGAAAATGACCCCCAGGAG
Seq A exon
GTGAGCCACATTGTCAGGTGGGTCTGTGCCAGTGTCATGAGCAAGGCGCCTGTGGGCACTCTCTGGCCTCCTGGACAATCCCGTATGCTGTAGATGCAGTAGTCACTGACTGTCCTTAACTACTGTTGAGACTCGGTGCTGCCTGGGTTAAGTTTCAGGGTCACTGCCTGTTTAGGGTGCCTGCCCCACGTGGTGCCTGCTCTGCTTCCCACAGACATCACAGTGAACTGCCATGTGAATGGCCTATTAGGAACCATATTTTACATCTCTGTCATGTGACTTTGTTCTTTAAAGTGCTGACATATGTTGGAGGTGTGGCCATGGCACCACAGGTGAGACCAGGTGGTCTTTGCTTGCTCCCTAGAAGCTAGAACACAGTGGACATGTTTGTGTAATCCTTCCTTCCAGTTGTTTTAGAGATCCCTGCCCTGCCTTCTCCCTCTTTGAGGCTGGAAGTTTAAGTGATACATAGCCCCTTCCCAGCACTGTCCCATGTGCTATGTGTTCGGGAACTCATCTTGATGGGGTTGGGTTTTGTTTTGTTTCTTTTTACCATTTGCATAGTTTTATTTTTTTTGTAGATTTATTGACAGTTTCATTCACATATATTATATATTCTGTTTACTCTTTACCTCCTCTTCTGTCTCCCTCCTACCCTGTCATCTGATCCCTCTTCCTACAAGTCCTGTCCTCTATGTGTGTCTGTGTGTGTCGGGGGCAGAGGACCCAGTGATTTTAAAGTAGGACCCTCTGTCTGAGCACATGTTTGGAATTGTCCATTGACATTTGTTGTGCTCACTGTTGGGTACAGAGCTAGGACTGCAAGAGACCTAGCCTCCCTAGCCTGTGATTGACTGTTGACAGATGCAGGCCACCACACTAACCTTAGACTCTTTCTGCTCTGTATTCTACTGTGTTCTCTGAGTCTAGTTTACAGCCATGCACTAAATGGTCATTTATTCCCAACACTTTGAGCAACCAAAAGAAAAGATTTTTTTTTTTTAATGAAAGTAGCCCTTATATACAGACAGAAACATAATATTAAATGCAGTTTGGCTAAAGAACAGCTGCGCGCCCACTCACCCCACCCCACCCCACCCCACCCCAGCCTGTGACTGCCCAGCCCTGGGGTGTGACCAGGTTTGTTACACCATGTGTCCTTTTTTGTTCTTCCCCTGGAAACCATCTCAAGGGGCAGCTGACAGCTCCAGCACTTTCTTCTGGAAGTCCTAAGGCAGGCCTGCTCTGTAGCGATGGAGCTCACTGCTCCAGCCCCCACGGCTAACCTTGTGTATACCCACAAGGGTTTCCTCAAGGTTTTTTTCCCAAAATGAAATGACTTTTAGATAAGAAAAGCCCCAGCCAGGCAGTGGTGGTGCATGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTACACAACAGCCAGAGCTACAAGAGAAACCGTCTTGAAAAAAACAAAACAAAACAAAAAAAGACTAGAAAAGCCCCAACCTGCATTTTTCAGGTGTTTGAAGGGCCACAAGTATGGGATTGGCCAGGGACACAGTCTTAGCCTTTCTTCCTTCTGTTTCTAG
Seq C2 exon
GCAGAGTCTGAATTGGCCCTGGATGCTGAGTTTCTGGATGTGTACAAGAACTGTAATGGAGTGGTCATGATGTTTGACATCACTAAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087-B230208H17Rik:NM_001024616:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(12.6=100)
A:
NA
C2:
PF084778=Miro=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: