GgaINT1001333 @ galGal4
Intron Retention
Description
NA
Coordinates
chr17:611903-613637:-
Coord C1 exon
chr17:613585-613637
Coord A exon
chr17:611995-613584
Coord C2 exon
chr17:611903-611994
Length
1590 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTTCTTTCTTTTTCCTCAGGCA
3' ss Score
11.09
Exon sequences
Seq C1 exon
GAAAATGCAAAAAACGAGGAGATGGTTTGAAACTGGAAAACGACCCTCAGGAG
Seq A exon
GTGAGTCACCTTGAATGTCCATATCTGCCTCTCAGCAGGAGGCCTCTTGTCCACCTTTGGTCCATGGAGAGTAAGTTCTGGATTTGTTTCTACTGTAAGGCTGACCCAGAGGGTGAATAAGGGACAGTGTGATCCCTAATGCTCTTCACTCTTTTGCCTGTGCCTTTTATCCCTGTTTGTGCCCCTGCCACAGCTTTCCTGCTGTTTGCTGTTTTTCTTTTGGGAATGACCCCACCCCAGCTGTTTACTCTGTAGCTTTGTACCTGTTTGCACACAGTGAGTGTCAGGAAGCCCTTTTGTAATGGGCTTCCTGAGAAAAATGAAGAAATCGCTGAATGCCACCTTGCTGCTCCTTAAAACTGGTCTAGCAATTACCTTTTAACACCCTTTGAAATGTAGAGGAGGCAGGGGCAATATAAGTGTCGCTAGTGTGTAAATGTAAATAGTGGCTTCCTCCAGGCTCCTGCACAAATGTGTGTCCTTTGGATCTATTGCTGTAGAATGAAGTGCCATGTGGGAGAGTGTAATCTTACGTTCCCCAAACTGCATTTGGGCTGCCAGTGCATTTCTGTGGTATCTCTATCAAAAGCTGCACTATTTTATCCTCAGGAAAGGTCAGTTTAAAGGCGCTTGATTGCGTGATCTCTACTGCAGATCTTAAAGAGCTTTATCCCTCCTGTTCATATGTTGTTGCATTTTAGGGTGCAGTGCATGGGCAGAGTTCTGGTACTTGTTCAGTAACCTCTTGAAAACCACTAGAAATTGATGCAAAATCTGGTGTTACTGATACACAGATTGCTGAGCACTCAGTTATGGGGATGAGTCACAGCAGCGAAGAGTTTTCTGGCACTGAGGATGGCAGTCGTCCACAATCCATGTGATCAAATCTGACGGATTTTCTCCAAAAATGTTGTTCTCTTATGGGAAAAGGCCTCTATGAGAAAAGTTGTGGCAGCTGCTTCTTCCTTCACAGTTGTGTATATTTTTCACTCTTGGCAGATGAGTCAGAGTTGTTCTGTTGGTACCAAATTGCAGCAGGAGCCTTGCAGGTTCAATTGTGACCACCACTGTATTTTATGCAGAGTCCAAATAGTGAAAACCAAACTGACTGCTAATGCATACTTTGAACTCTGCGTGGAAGAAAATCAGTAGAAACTACATCCTAGCTGTACACATCAGAAACATTAGAAATACAGACAATATTTGGGTTGGCAAAGAAATGGAATGTGGGAGGCAAGTTCTCTGCACTCTGTTTTGTAGATTATACAGACTTATCTTGCTAATGCAGGATTTCGGGGCACAGGGAGAGAGGAAGAAGTGCATTTTAGGACTTCCTGCCAGTCATGGTTTCTTTTCAAAGGCTGCCAGGTGATACACGTCCTGATACACGTCCTGGTCCTGTGGGCACTGCAAGCTGTGACCCATCAAGGCACCTTTTCTAAATGATGATAATGTGAACTCCATAGGTACTTTTTACAGTGGCTGTCACTTTTGGCAGTTTGCCTATTTAGCACTGTATCAGTTGTATTCTGTATGAGCCTGAAGTTGAATTATTTACTGCTCTTTTTGCGTTTCTTTCTTTTTCCTCAG
Seq C2 exon
GCAGAGTCAGAAATGGCCCTGGATGCAGAGTTTCTGGATGTGTATAAAAATTGCAATGGTGTAGTGATGATGTTTGACATCACCAAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(12.6=100),PF0465211=DUF605=FE(4.8=100)
A:
NA
C2:
PF084778=Miro=FE(22.2=100),PF0465211=DUF605=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]