HsaINT0025587 @ hg38
Intron Retention
Gene
ENSG00000196642 | RABL6
Description
RAB, member RAS oncogene family-like 6 [Source:HGNC Symbol;Acc:HGNC:24703]
Coordinates
chr9:136828494-136829484:+
Coord C1 exon
chr9:136828494-136828546
Coord A exon
chr9:136828547-136829392
Coord C2 exon
chr9:136829393-136829484
Length
846 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGTTCCCTCCTGTCCCCAGGCG
3' ss Score
12.32
Exon sequences
Seq C1 exon
GAAAATGCAAAAAGCGAGGCGACGGCTTAAAGATGGAGAACGACCCCCAGGAG
Seq A exon
GTGAGTGCCAGGTACACAGTGGGTAGCAGTGGCTCAGGGCCCCGGGGTGCGTGAGCCGGTGCCCAGCGCTTCACACGCTTTTGACCCCAACCACCCCAGTTATGCTGTGGCCACGGGGGCCGCTGGCCTTCCCAACTGCTCTGAAAACCCCACACTGCCATGGCTGTATCTGGGGGTGGCCGGCTCACCTGCACTCGACAGACATCACGTTGGACTGACCCCTATTTGCATTTGAGTGACCTGAGAGGTATTTAAGTGAACTCGCCAAACTTTTATCCCAGTCTCGGTGGGCTCGGCCCTTCAAAGCACAGGACACATCTCGCAGCGCCATGGGCGTGAGTTTCGCTCACCGGAGCCACCTGGGGCCAACCCAACCTGAGCCCGACACACCCAGGGCCTCGCACTCTCCGTGCGGTGCCTCCCACTCCCTTTAGAGCATGGGGTGGAGTGACTCTGCCCACAGCACTGCAGCTAACCCTGTTTGTGGGCACTGGAACCTTCCGGAACGCACATCTAGCTGAGGGCAGCTGGTAGTCCAGCACCCACTTCTATTTTCGAGTGGTGGTTTGGTTATCCGTGAGGCCTGGGGCGGACACTGCTGTGATCAGTGGGAGGTCCTGGGTAGGAGGCTTGTTCAGGGAGCCATCAGCGAGGCTGGTGTTGACCGTCAGACCCTTTGGGGCAAACCTATGTTTAGCTATCCCATCTCTTCAGCATATCGTTTCCAAATGGAAATGGCTGTTATCTTTTCAGATTAGAAGACTATCCAGCCTTTTCTAAAACTGTGGGCCACACGGGTGGGGCCCAGCCTGGGCCAGTCTCACACCTGTTCCCTCCTGTCCCCAG
Seq C2 exon
GCGGAGTCTGAAATGGCCCTGGATGCTGAGTTCCTGGACGTGTACAAGAACTGCAACGGGGTGGTCATGATGTTCGACATTACCAAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196642:ENST00000436380:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(12.6=100)
A:
NA
C2:
PF084778=Miro=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development