GgaINT0125897 @ galGal3
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11148166-11148775:+
Coord C1 exon
chr17:11148166-11148265
Coord A exon
chr17:11148266-11148656
Coord C2 exon
chr17:11148657-11148775
Length
391 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TACTACTTTTCTCCCAATAGTTC
3' ss Score
7.91
Exon sequences
Seq C1 exon
AATACAGGCTACACTCCAGGTACATGGCACAGGACGGATGTACATTTGGAAAATCCAGAGTATTATACAAGATGGTATTTCAAATATTTTTTAGGAAAAG
Seq A exon
GTATTAGTGTTTTTGTGAATTGCCTGAATTCTTGTTCAATGCAAAAAAAAAAAAAAAAGTATCTTTGAATTTAAGTTATTTATTGGAAAAGGATGTTATTAACTTACTATTAATATGTTTTCTGTCCTGTATTGAAAGCAAGTTCTTATTTCATGTCATTTTAACTTAAAGACAGAGGATGTGATTCTGTAAGCAGAAGAAATCCTGCTAATGAACAGGAAGATTTTTAAGCCCCTCTAGGCCTTAAAATCTATACCTATCTCTTGTCTTGAATGCATATCTGTGTATAAATAAATATTTACGTAAATAAGCATATATTTTCTGTGTTGTGTGTATTTTATGAGTACGTGTGTTTTCTTGACAGTGGGTAATACTACTTTTCTCCCAATAG
Seq C2 exon
TTCATCAAAATTATATAGGTACAGACTCAGAGAAGAACCCTTTCTTTCTGTCTGTTGTACTTTCTGACCAAAATAATCAGCGTGTTCCTCAATACCATTCAATTCTTTGGAGAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000038633:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTACACTCCAGGTACA
R:
CGTTTTTCTCCAAAGAATTGAATGGT
Band lengths:
216-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]