GgaINT0125902 @ galGal3
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11152141-11152918:+
Coord C1 exon
chr17:11152141-11152216
Coord A exon
chr17:11152217-11152819
Coord C2 exon
chr17:11152820-11152918
Length
603 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTTCTCCTTTCCATGTGTAGAAA
3' ss Score
9.04
Exon sequences
Seq C1 exon
GGATCTGTGAATTTTAAATTTGGAGTCCTTTATGCTAAGGATGGGCAGCTTACAGATGATGAAATGTTCAGCAATG
Seq A exon
GTGAGTCTTTCACCTTTTCCTTATTTGTTCTATTCATACAATTGAAAACCATAGGATAGTGCCCAGATGACAGATAATGATTATTTTAACAGTAATTTTGTTAGGTTTTCGTGCTTGTGTTGGGTGGGGAAAAAGGTAGTATAGACTCTTCTGGTTCTACAAAAGGTTGACATAAGAACCCTACTATTACATCTTGGAATATGCTGAAATTCTTTCTAGAAATAGACTATACAAAGTAAGGTTTGGAGGAAAAAAAAAAAAAAAAGCAATTGAAGGAGGTGACTCTGATACCTGCAAAAGGGCCTGTTGTTTCCAGTTCTCATTCTTATAGTTTCACATCATTATTACTTTCTTCTATGCGCTTAAATAGTGTTGTGGAGTTAGCTGAAGAGATGATTCTGTAGTGTCACATGATGATCCCTTTCCTATAATTCTGCAAGACTCAGAGGCTGTTTCTGTCAGAGTAGAAGGCTTGGATGACATTAGGAGAAACTATAACTCCTTATGTCCTGCATACAGAACTTTTTCTTGTAGTTTGCTTAGTCTTTGATAGGAGTTCTACACCTGCTTTTCTGCTGTAACTGTTCTCCTTTCCATGTGTAG
Seq C2 exon
AAACTGGAAGTGAGAGCTTTCAAAGATTTTTGCATCTCTTGGGTGACACAATTACTTTGAAAGGCTGGACAGGCTACAGAGGAGGACTGGACACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000038633:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(2.1=15.4)
A:
NA
C2:
PF0214510=Rap_GAP=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]