GgaINT0125906 @ galGal3
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11156787-11159112:+
Coord C1 exon
chr17:11156787-11156832
Coord A exon
chr17:11156833-11159005
Coord C2 exon
chr17:11159006-11159112
Length
2173 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AATACTTGTTCTTTCAACAGGCT
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATATTTTTGCCTTAGTGAGATATAATAAGCAGAATGATAGTTACAG
Seq A exon
GTAGGTGCTGATTGTAACTAATAACTTTATTCTGAATTTCTGATGGATTAGAGGTAATGGGAAAACATTTTGTGTTGTCCACCTGCCTGCAAGCCAGGAAGGCAAATGAACTTTTAAAATCGAAGAATAGTTGATCCTAGTTACTGTCTTGAGATTAATGCTGTAAAATAAAGTAGAAGTGTTGAAGGCATACTTTTATAGAATCACAGAATCATAGAATGGCTTGGGTTAGAAGGGACCTCAAGGATCATTAAGCTCCAACCCCCCTGCCACAGGCAGGGTTGCCAACCTCCATGACTAATACTAGACCAGGCTGCCCAGGGGCCCCATCCAACCTGGCCTTGAACATGTCCAGGGACAGGGCATCCATAAATTCTCTGGGCAGACTGTACCAGTACCTCACCACTCTCTTGGTAAATAACTTCCCCCTGATATCCAACCTGAATCTTCTCTCCTTCAACTTAAAACTATTTCCCCTTGTGCTGCCATTATCTACTCTTGTAAAGAGTTTGTAGGCTCCCTTTAGGTACTGGAAGGCTGCAGTGAGGTCACCCCACAGCCTTCTCTTTTTCAGGCTTAACAAGCCCAGCTCCCTCCACCTGTCTTTGTAAGGGGATGTTTATTTTAATCTTTTTTTTCTCAACACATAGTCCAGGCCACTGGTACCAACCACAACCTGTGGTTTCAGAAGCTGCTCATCAGATCTGATCACGTGATTCCAATATACAATAATTCCTGGATTGCTTGGGAAGTTTATTAATTCTTCATAGGCTGAGCAAACTTCATAATCATCTGAGAGTCTGGATGGTTGGATTCATTTGTTTGCTTTTTGTTCTCTCTTGTTTTATTTGCTGCAATACAGGTTGCCTGAATATTTTGTATCTTAAAGATACTGCATTCTTGGTTTGCTTCAAAAATTGATGTTTACCAGTAAAAATTTGGTGTTTTTTGTGTAGCTGAACTGCAATTCCACCTACTCACAATGTAAGAATGTTACTTGAAGTCATTCATAGTGTAAATGTGGAAATGCACAGGAATGTGAAGGTGAAAAGAAAGTGGGCTAACGTTAGTTGGATCTTCTTACCTTTTCCTCTTAACTCCCTTAGTATTTGGGAATCTTTATTTAGGTCTGTGCTGGATGAGAAGGTTCATACCATCGTTCTTGCTCTTGATGCAGAATATAAGATAAGACAAAGCATGTTATTCCAAATAGGTGCAGCATTTGAAAGTTTACAAAGTTGAGTTCTTGAGATGCATATTCACTGAGGTTTTATATATATGGATATGTACATCTCAAAGGACTTTTTTGTTAGAAATAACTTTCTTATTTTATACAGATAATAAATTTAAATATTCTATAAAAATCTATATAATTTTGTATTACTGTCTTTGTCTGGCATACCACTAAAGCTAGCTGAAGAGAAGAATCAAACAGCATGATATTTCATTGTTTGTTTCCTCCCTCATAGATATTTTATTTACTTGTTCTGCTCAAGCTAAAGAACATTTTATACTGTGTGTCAGGATAAATGACTAATTTTTACCTGAACTAAATAAGATAGATATAGGGGATTTCTGCGTTTGTTTCTAGTACCCAGAGAATATTGTATGCACAGTTTTGTTACCTGCCATTTGTTCTTGCCATACTGGATCCTTTGTTGATCAATAGTAATCAGCAGGTACAGCTGTCATGGGAGCAGTTCTCAGTCTTACTTCCTCAGCAAAAGTGAATTTTCTGTTCCCAATATAGATTCAGTTGTATTAGCCATTGTTACTCAGGAAGATTGTTATGCATGTGGTGAATGTGCAGGTAAGGCAGAAAGCCTTACCTGTAATGAGAACATTTTGTAGGGGAAGAGCTGTTCTTTTTAGAAAGGACTAGATTTTACCAGCACCATTAACAGCATTATTCTGTAAATAGAATTACAAAATTCTATTGTAATTTTAGTGTCTGATTATTTATGTAAACAATTCATAATTTCAGTCCAAGTGAATAATTCCAATTGAGTGCCCATTTATGAGATTTTTTTGTGTGTTCATGGAAAAATTTCATGGAAATTTTTCCCCCAGATACTCCCAGATAACTGTTTCTGGTTCTTTTTTTTTCTATCTGTAAAAATGACAAGCTTTGAATGTGGCTTCCAGTATAGATAAATACTTGTTCTTTCAACAG
Seq C2 exon
GCTAAAAATATTTTCAGAAGAAAGTGTTCCTCTCTTTGGGCCTCCACTTCCATCCCCACCTGTGTTTACAAATCACCAGGAATTCAGGGATTTTGTTTTGGTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000038633:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(7.9=100)
A:
NA
C2:
PF0214510=Rap_GAP=PD(22.0=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]