GgaINT0125915 @ galGal3
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11166444-11167706:+
Coord C1 exon
chr17:11166444-11166602
Coord A exon
chr17:11166603-11167639
Coord C2 exon
chr17:11167640-11167706
Length
1037 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATTTCCCATTTCCATTGCAGGTT
3' ss Score
11.14
Exon sequences
Seq C1 exon
GAAATATGTCTTTCTGACCCTCCAGTGGTTATGACGCTAGTTGATGGACCTACTGGAGACAGTGACAATATGATTTGTGTAGCTTATCGGCATCAGTTTGATTTAGTTAACGAAAGTACTGGGGAGTCCTACAGACTGCATCATATTGAAGCCAACAAG
Seq A exon
GTAAGTTTCCAGCACAGAAACTGTTTTCTTGCAGAACCGCACTGAACATCATTTCTTGCAGAATCAGTGCTTGCTGTGCTGCTGACCTGCTGGGAGCACTATTTACGAAGATCCTATGTCTCCTTTACTTTTCACTCCTGTAACTTCTGCTGTAGGGGCACTCTGAGATACTTGTCTCTTTTGGAATGTGTGATGATAATTACTCCCGAGAGAGGCAGTTACAAGGCATGACACATTAGGACAGAGTCTGTGTTTCATTCTCTGAAATATTGATGTCAGCGTAAATGCAAAGCCATTATTCTCCTTTTAGTCAATAGTTTGCATTTTCCCTTTTCTTCACATTCTCAATCTTCTATTGGTCAAGACTTCAGCAAAATAACCTCAGTTTTTGGCCACCGGTATCTCATTCCGATTTGCTTATTTCCTTGTACTAAAGCTATAATATTTGTGTGTATCTTTTAGTTGTTTTTAAGAAACTGCTGCCCAGCCAAATAATAAATTAACTATATCTTTCTAACTAAGATGTAGTGTTGGGATTTAAGTAAACATCCTGAGTTTTGGAAAAAGACTTCAAATGTTTCCTGCTGTGGGGAAGATAATGATCTTAGGCATCTTTGAAAATTGAATAATTTTAATTATTACTAAAAATGGATTTGAATGTTTAGCTTTAGATGTAAAAAGTTGTTGATACACAGCTGTGCTAACTCAATTTTGCAAAATGTATATGGCCAAATAAATTAGGTAAGTTTTTATCACTTTATACTATAGGCATAGTATTGAATATGTGTGAATATATGAATATATTGAATATGTAACTGAAGTACATCGTTAAATACAAAAGAAATTGTTTTCCATCCTAAGAGCACTCTAAAAATGAATCACAAAACAGGCTGCATGTGAAAAATCACAATTTTTTTTTTTAATCTGTAATTGTGCAGCAATACCAACTGACTGTATTGCTTCATAGTCAAAACATGGATGTAATAACTGCAGTATCCCATCTGAATGTTCACTATCATTTCCCATTTCCATTGCAG
Seq C2 exon
GTTAATTTTGTTGCAGCTATTGATGTATATGAAGATGGTGAAGCTGGTCTACTGTTATGTTATAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000038633:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(17.2=100)
A:
NA
C2:
PF0078017=CNH=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTCTTTCTGACCCTCCAGTG
R:
AGTTATAACATAACAGTAGACCAGCT
Band lengths:
222-1259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]