GgaINT0126125 @ galGal3
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8585429-8586020:+
Coord C1 exon
chr17:8585429-8585533
Coord A exon
chr17:8585534-8585947
Coord C2 exon
chr17:8585948-8586020
Length
414 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGA
5' ss Score
2.17
3' ss Seq
CCTTGTATCTTCTGCTTTAGCCA
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTTGAGTTACTCGAATCAGAAGCTGGAAAACGTCAAGACTGAAATGGAGAAACAGATCTTGGAGAAGCAAATCAAAGAAGTGGAACGGGAAATAGAGGCAATTAA
Seq A exon
GTGAGAAGTCTTCCTTATAAGTTCTTGATGAAAGTGCAAACCTGTTCTGGGAGGCTGACTTCTGTAGTTCCCTCCTTCCTTGGGTGCTTCTGAGTGTGACATTGGGAGACGATTTTGTGCAAGCCAACACATATAAAGCTATGAAGTGTTATTCAGACTTTACAGAGCTCTCATATCCGTAGCTGTTCACTAAGAGTCATGCTTTGTGCATTTATATTCAAGTAAAATTATTTTAAGTCCAGTAAGGAAGAAACCTTGTTTGTGAGCTATCAATGTTAAAGAGCCTGGTGCTGTGAAGTAGTACGTTTTGGTGGAAGTTAATAGCAGGTGAGAGGGATATGATGACGAAAGATCAGGATGAGAAAGTGGCTGTTTAATGTGGTGTTTTCTTTCTCCTTGTATCTTCTGCTTTAG
Seq C2 exon
CCAACTTCCAGAAAGTGACTTGTTAGGAGGCAGATTTGATGAGCATGACTGGGAGAAGATTGCAAACGTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139211=Myb_DNA-bind_6=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]