GgaINT0126251 @ galGal3
Intron Retention
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8558946-8559530:+
Coord C1 exon
chr17:8558946-8559046
Coord A exon
chr17:8559047-8559455
Coord C2 exon
chr17:8559456-8559530
Length
409 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGTGCATTGTTTTTCTTTAGTAT
3' ss Score
6.18
Exon sequences
Seq C1 exon
TTCCAGGGGACCCTCAGCCCATGGAAGGAAGTGGTGCAGCAGAGCACACACCAGCTGCAAACCAAACCAACACAGATCCATCTGCAGCTGTTGATCAAGAG
Seq A exon
GTGAGTTAGACTGAATTGCATATACAGGATATTCTAACTTTGTGTAAATAATTCATGATTCCCAATAGAAGCTTCATAGCTGCAGAATAAATAAAGCATGTTGTTGTTATACACAAACATTTGCTATGTTTAGTTAAGGAATTGGAGAAGGGAAGTGGAAGTGTAAACGAAGGTAGGGAGTACATGAGTACTTGCATCTCCTACCTTGGCAGAGCTGCAAGTTGCACGTGTGCAGTATGTGCCAGGAAATGGACCGGGAATGCAGGAAGTAGCCACATACTGTGTGTTCCATCTGACTCAATGGATTGCAATGCTGCTTTGCTTCAATGGGATTAATACAGTAAAAATGTGAAGTAGGGTTGTGATCAGCTAGAGGAATAAAGATAAACAGTGCATTGTTTTTCTTTAG
Seq C2 exon
TATTTAAACCCTGCAATTGTTCCACCTGGATCTGGGCTTCCTGTCTCCAGCCCTGACAGCTTCCAACCAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364:ENSGALT00000003726:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]