GgaINT0126273 @ galGal3
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10289754-10290399:+
Coord C1 exon
chr17:10289754-10289865
Coord A exon
chr17:10289866-10290273
Coord C2 exon
chr17:10290274-10290399
Length
408 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTAATTTCTTTTTCCCGCAGATG
3' ss Score
11.84
Exon sequences
Seq C1 exon
AGATGAACTGATGACAGCTGAGAGGAATGCAGAAGATAAGATCACTGCTCTGGAGTTGAGAGAACAGGAGCTACAAACTGTCATTCAGCACCTTTCTGTAGACTTGCAAAAT
Seq A exon
GTGAGTTTCACATAAGGGGTTTGATTCAAAGAGCTCCCTGTCTACAGAAGTTAGATTACGTATCGACTGTGAAATCTTAAGATTCAGAGCAAGGAATTCCTCTTTTTTAGGCTCGAGTTGCTGGTTCTGGATGTGAGAAGAGACTGGAAACGTTACGGGTAGAGCATGAATCTCTGAAGGTGGAATATGAACAACACAAGCTAAAGGTTAAGTATCTGCAGATGCATCTGATGTAAGCACATACACTTGGATAATGCACTCTGTGTTTGAAATTTGATGTCTGTTAAGTGTTTTAGCATCATATTGTCTTTTCAGACAGAACCAACGACACTTTTTCAAGTCAAACCACAATGAATTAGATAAAAGCTTGGCTATGAAAAGGGATTCTGTAATTTCTTTTTCCCGCAG
Seq C2 exon
ATGACTTTTGAATTTGCTGAGAGAAGTAAACTTATTGAACAGTTGCAGGAAAAAGTGTCTTCCTTGGAAAAGAAGTTAGAAAGAAATCTTTCAGGGGATGAACATGTACAGGAACTGCTCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAACTGATGACAGCTGAGA
R:
CTCCTTGAGCAGTTCCTGTACA
Band lengths:
238-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]