HsaINT0070362 @ hg38
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124911901-124921240:-
Coord C1 exon
chr9:124921129-124921240
Coord A exon
chr9:124912027-124921128
Coord C2 exon
chr9:124911901-124912026
Length
9102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATCTCTGCTTTCACCTGCAGGTC
3' ss Score
13.2
Exon sequences
Seq C1 exon
AGATCATGTGATAGCTTCAAAAACAGGTGCAGAAAGTAAGATCACAGCCCTGGAACAAAAGGAACAAGAGCTCCAAGCACTCATTCAGCAGCTTTCCATTGATTTGCAAAAG
Seq A exon
GTAAGTAGAATATGAGGAGAAGACCTGGATTTCTAAGATTCATAAAAACTAATTCTTTCAGAAATTTCTGCCTGAGAGTAGCTACTGAACATACATTTCTCATGCAGTCCACATGGCTCCATTTCCTGTACTAGCCAGGCTGCACTCAGATGGAAATGGCCATACAGCTGAACAAGGGTTGCTTAGCAGAAGTAGTCAGTATTTTCCTGTCAGGAATTCTCAAAGTACACCATTTGGTCGACTCAAATATGTCTCTCTTTTTTTTTTTTTTTTCTTTTTTTTTGGGACAGAGTCTTGCTCTTGTCGCCCAGGTATTATAGGCGCCCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCGTGATCCACCAACCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCGTGCCTGGCCTGACTCAAATATGTCTTTAAGCACATAATGGACCTTGAGCATGAAAAATACAATAGTGGCTGACATGACCAGGGCTGTACCTTTGACATACTTGGCTCTAATCCAGTTTGTTTTATGGCACGTAATCAAATGATGTCATTACAATTTGTTTTTTCATTTCATTGACATACATTTGTTTCTACATTAGGGCTGTGCTACACTCTGAGAATATAAAGATGAATGATAATATTTTTGAATATAAAGTAGTGTTTCTCAGGCCCAGCACAGTGACTCAAGCCTGTAGTCCTAGCACTTTGGTAGGCCAAGGCAGGAGGATCACATGAGGTCCTCCTCTTGACCCCATCTCTACCAAAAAAAAAAAAAAAAATTAGCCAGTTGTGGTGGTGTGCACCTGTAGTTCCAGCTGTTTGGGAGGCTATGGTGGGAGAATCGCTTAAGCCCAGGAATTCAAGGCTGCAGTGGGCCATGACCATATCACAGCACTGTAGCCCAGGCAATAGAGCAAGACTATCTTTAAAAATAAAAATAAGGCTGGGTGTGGTGGCGTGCACCTGTAATTCCAGTACTTGGGAGGCTGAGGCAGGAGATTCGGTTAAACCTGGGAGGTGGAGGTTGCAAGTGAGCTGAGATTGTGCCACTGCGCTGCAGCCTGCCTGGGTGACAGAGAGAGACTCTGTCTTAAAAAAATAATAAAATAAATAAATAAATAAATAAATATAAATAAAATAAAGTAGTATTTCCCAATGACATAATTTATTATTGGCATTTTGAGCAGAACAACTCGTATTGTATGATTGTCCATTGCATTGCGCGACATTTAGCATTCCTGGCCTCTGGGTTCTGAATGCCAATAGCATCCTTCAGTCATTGACATCCAGCCCTTCCCCTCACATCACAGAACCACCCCCTATTCGGCAGTGCCATCCACCCTACCCTCATCTTTCAGAATTGCTGATCTCAAGTGAGACAGAGCCTTACAACATAATTACAGTACAGTAAGATTTTGTCAATAGAGGTCTTAGCTAAGTATTATCATACTTACAGATACCTAAGTGGAAACTAAGAGGTTATTGACCTTGTTCACAGTTATAACCGTAAGTGACAGAGTTGGATTCTAACCCAAGTCTTACTCCAGAACTCATGCTTATTCTACTGCACTTTGCTGCCTCACAATAAGGAGCACCCAGTAAATATATACGTGAATGAATGACTGTGATACAGGCTTTTTACCCTCAATGAACTAAAAATCTCAATACAGACATTGTTTTCCTTCAGAGGCTTACAGTTTCATTATAGAACTCAAACCTACTGTAATCACAAGAAAAGAAATGCTCAAACAAGAAGTCTCAAGTAAGTGAACTAGGTTTTTCTTTTTTCTTTTCTTTTTTTTCTTTTTTTTGAGACACGGTCTTGCTCTTTCACCCAGGCTGGAGTGCAGTGACGTCAACGGCTCACTGCAGCCTCAGCCTCCCAGGCTGAAGTGATCCTTCCACCTCAGCCTCCCAAATAGCTGGGACTACAGACACATGCCACTACAACAGGCTAATTTTTTTTTATTATTATTATCTGTAGAGATGGGGTTTCGCTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGAGGTGAACCACCACACTCAGCCCTAGATTTTTCAAATACAAAAGATATACCATAGGGGAAGTACATTCCAGCCCAGGAGTCAAGGAAATCTTCCTAGAGGAACTGGAATGTCAAGGATCAGGAGGACAGCAGGAGGCAGAAAAGGCAGAAGGTCAGAGAGTACATTTGGGGTCATGGAAGAAGGGGGAAAATAGATACACAACTTTGGTTTTTGTATTATTTTGTTTTTTTCTGAGACAGGGTCTCACTTTGTCACCTAGGCTGGAGTGCAATGGCGTGATCTTGGCTCACTGCAACCTCCACCTCCTAGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAATAGCAGGGACTACAGGCACCAACCGGGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCATCAAGTGATCTGCCCACCTCGGCCCTCAAAGTGCTGGGATTACAGGCACCTGGCCACAACTTTGATAGTCAAGGGACCCTTTGATGTCAATTAGAACCATCTGTTGTTTTTATAATTGGAAAAATGGGGCTCAGGGAAGTCCAGACTTTGGTCACAGTAAGTTTCTTCATTCATTCTAAAAATATTAGTTGAGCTTTACTATGTGCTGGGCTCTGTGCTGGGTGTTCATAATATTATGGTGAGCAAAATAGATACAGTTCTTGCCTTTGTGGTGCTTATAGTCTAGAAGGGAAGTCAGACATTAATCAGTAATCACATATATAATTACTAACCGTGATGAGTGTTCTGAAAGAAAACTACGAGATTTAGTGAGATCCTATTAAAAGATATCAGATCAGGGCTGGGCTTGGTGGCTTACGCCTGCAGTCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCTTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCAAAAAGAGCGAAACTCCGTCTCAAAAAAAAAATATATATATATATCAGATCAGATCCAGTTGGAGCCGTAGAACACTTAAGGAAGTAACACTCGATACAGTGCTCAGGCTGGAGAGAAAGGGATGATGGGAGAGAATTTCAAGCAGGGAACAGCATGAACAAAAACTCTGAGGCAAATAAAAGGATTAGCACATTCAAGGAACTAGAAGAAAGCCAGTGACATACAGAATAAGAGAGAATAACAGATTACTCTGGCCGTTAGGAGACTGAGAGGGTCTTCCACTTAGGAAGCTTTTGCAGTTGTTCGACCGTAAGATGATGGAGGCTTTGACAAGTGTGGTGGTGAAGATAATAATGGGTAGACAAATGTAAGAACTATTGAAGAGATTGACAGACTTACTAATGTAATAGATATGGGAGGACAGGAAGAGAAAAGTCTGTATTTTTATGGGTGATTTATGGGCTTCTGGCTTGGGCAAAAGAAGGGCTGGTATTGTGTGAAGATTGTAAATTTGGAATTTGTTTTTTTCTTGTCTTTATTGAGTATATATAAAAACATATTTATAAAATATGAGTATGATAGAAAGTATAATAAGGCAATGAGCCCTCTGAGCTATCCCTCAGGTTAAGAAAAAGAACAATGTGTTTATCTTTGAGGTTCCCTCTGTGCCCTTCACTATTCCATCCCATTCCTTTTTCCTTTGGAAGTAAGTACTATTTGGAGATTGCTTCATTGTCTACTTTGCTTTCTAATGTTGTCAGTTTTATCCCTAAACTATCTTCTTTAGTTTCCCATGCTTGTTAATGTTATATAAATCATTCTGTAGGTATTTTTCTAAACTTACTTTTTGTGCTCAACATTGCACTCCTGAAAAACATTCATATGATACCTGGAGCTATAATTTATTTTTTCTCAATTATATAGTAATATAGTAGGGACATACCAAAATTTTAATTTTTGTCGATGGTGGGTTTTTTTTTTGTTTTCGTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTCAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCAATCATGGCTCACTGCAGCCTCAAATTCCTGGGTGTAAGTGATCCTCCTACTTCAGCCTCCCATATATCTGGGACTACAGGCTTACACTACCACACCTGGCTAATTAAAAAAAAATTTTTTTATAGTTAAGGTCTCACTATGTTGCCCAGGCTAGTTTTGAATTCCAGGACACAAGCAATCCTCCTGCCTCAGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCACTTTGCCTGGCTTGTGAAGATTTTTAATTACTGAATAGATTTCCTTAATGGTAATTCTAAGTTTATGTATTTCTTCCTAAGTTTTGTTAATTTATATTTTTCTACATAATTGTTCATTTGCTATAAGTTTAATGTTTTGGCATTGTATTTCTTATATTCTTTTTTTAGTTGCTCCCCTATCTTCATTCATAGTAGTATTTATGCATTTTCTATTTTTTTCTAGTTTATTCTTACCAGATGTCTGTCAGTTTGGAAACAAAATTTTACTTTAATTCTTTTCATTTTGTTTTTATTTAACCCACAGTGTTCAGAATTACACATTTTTTACTCTACTGGATAGCAGTTCCTCAACTGTAGCCATTATCTTTCAACTTCCCAATTTATGTTCTTCCTAACCTGTATTGTACTTAACACAATATTTTCATGGAATTCACCTTACTTTTTTTTTTTTACTTAAATAAGTATATTTATGTATTTATTTATTTATTTATTTATTTATTTAGAGATACAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAGCCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCATCCCGAGTAGCTGGGACTATAGGCACATGCCACCATGCCCAGCTAATTTTTGTATTTTTAGAAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCTTGATCTGCCTGCCTCGGACTCCCAAAGTGCTAGGATTACACACGTGAGCCACCACGCCCTGCCATTTATTTTATTTTATCTATCTATTTATTTATTTTTGAGACAGAGTTTTGCTCTTGATGCCCAGGCTGGAGTGCAGTGGCGCGATGTTGGCTCACTGCAACCTCAACCTTTTTTGTTTTCAATTTTTTTACTTTTGTAGAGAAAAGATCTCCCTGTGTTACCTGGGCTGGTTTTGATCTCCTGGCTTTAAGCAAGCCTCCTGCCTCGGCCTCTCACAGTGCTGGGATTACAAACATAAGCCACTGGTCTCAGCACCATAAATACATTTATAATGAAGGAAAAAAAGGCATGTTGGGAGAACCAAAAGGATAGACAAGTGGTTAACGCTTAGAAAGGAAGTGGAAACGGTGCTAGATGAGGCTGGGAAGGTATGCAGGGCCAGTTGTATAGACTAAATAGTGAACATGAAATTTCATAAATAATCATTAGTGAATATTTAACAAGAATAGCTGAGCATTTACCCTGAGCTCAGTATTCAAGAGCTTTACAGATAGGGACTCATCGAGTCCTCACAACTACCCTTTGGTTAGACAGTGTTTTCCTATTTTACAGGTGATAGTAATGGGCATCTGACATCAAAGGCTAAATGATTTGTCAAGACCGTACAGCTGGAGTCAATGACAGAGCCAGGATTCAGACTCATGTCTGTCTGAATCAAGTGACCACCACCCAGAATTGATGCAGTCCATATTCTGGGACTATAACTGTGAGACCCAGACTCGGGAGGGAGTAGGTGAAGAGGGTGATCATTAGGAAAGGGGCAGGTTTGATGTCAGGGAGTATGGCTTGGTAACTGTTCCCGTAGTCCACATGAGGTGTAGAGGGCCTGAAGTAAATCAGCCAGCCTGGAGAAGGAGATCGCATATCAATATGTTGCACAAGAGGCATAAGTGGAACTTGGCCACTGATTCTTTTTCTGTCCCTAACTTTGCCTAACACAGTGACCTGTGTAAGATGTGTTGTTTTGGTTTTAACTGGAATGGGTCATCTATACCTCTTGAATTCAGATTGATGTGTAGGGGAACAAATGCAGACTTTGGATCCAGAAGACCTGGATTTAAATTCTTCATCTATCGCTAATAGGTATATGCCTTTGGGCTAGTCCCTAAGCTTCAGTTTCCTTGTAAATGGATGTGATAAAGAGCATTTGTAAGGACTAGACATAATAGGAAGTGCTTGCAGCGTTCCCTTGACCCTATATGTCTGTCTTTACGCTATTACCACACTGTCTTGGTCATTGTCACTTTAGAGTTGAAATCAGGTAATGTTCTCCAACTCTTACATCAACAGTTACTCTTTTTCTTTCCTTTTTTTTTTTCTTTGAGACGGAGTGTCGCTCCTCGCTCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCGTTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCACGTCCGGCTAATTTTGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCACCTCAGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTACAGTTATTCTTTTTCAAGATTGCTGCAGCAATCTTGTTATAGCTGCTTCTGCTATATTACAGTTATAACTATTGCTAGTATTAACATTAGTAATAAGAGACCCATAAAGATGGGTCAACATGGCCAAAACTGGCTTTTTTTTTCCTATCACACTCACTCACTTTCCTGTGTTATCCACCTTGCATAATGTTACCATTTGCCCAGGTGTCTGAGCCACAGACCTGAGAGTTGTGTTCAGCTGTTCTTTCCTCCTCACCCAGCCTCTAGCCTTGCAGGACTTGTCTGTTACCTCTTTGTATGTGCTGCCCTTTATGCAGAATGATTGTTCCTCTTCCACCCTCTTTCACCTGGACTTGCCCATTCAGGAGGCCTGATCTGATTCTCCCAGTTAATCCCTCTTGCATCTCATATCTCATAGCACGGTGTGTGTCCCTCTGTTGAAGCACAGTTGTTTTGTAATTAGGTGTGTGTCTGTCTCCACCACCAGCCTCCATGCTGGAATTAATGTTGATTGTATCCTCAGAAAACAACAGATAGAGTTCAGGCTTGATGAAAGTTTATTGAATTGTGGGGTCATAAATCTAGTCTTCAGACTTCCCCTCCACTATCTCTGTTGTCCACCTGTGAGAATTCAGAATGGCAAATACTTCTTCCCAAAACCATACACCCTGGTTGCTGCATCTTATCCTGAGGAGAGATCGGCCAAGTTACAACTGAACATGAAAGTTTATGGCTTGAAATGGAGCAACGGAAGTGTAAGATAAGGGAATTTGAGGGAACAGAGTACATGTAAAGAGGTACAAGTCTTCACAGTGAGATTTTGTTGCCCTACAACCTTTTCTGGGGAAGAATGGGCATCCTCAGTGGGGATGTAAGAACTCATGTATTCAAAGCTTCCTGGATCCTCTGCTTTGACATTGAGCAGTGATATGGTTAGGCTCCGTGTCTCATCTCAAATTGTAATGCCCACATGTCAAGGGAGGGACCTGGTGGGAGGTGATCGGATCATGGAGGCAGATTTCTCCTTTGCTGTTCTTGTGATAGTGAGTGAGTTCTCATGAGAGCTGATGGTTTTACAGTATGGCACTTCCCCCCTCGCTCGCTTGCTCTATCCTGCCACCGTGTAAGATGTACCTTGCTTCCCCTTCTCCTTCTGCCATGCTTGTAAGTTTCCTGAGGCCTCCCAGCCATGTGGAACTGTGAGTCAATTAAATCTCTTTCCTTTATAAATTACTCAGTCTCAGGTATTCTTTATAGCAGTGTGAGAATGGACTAATACAAGCAGCAGTTGAAGATTAGTAGCAGTAAAAGGAACCAAGTTAGTCCCAACCTGTTGCTACCACCACTACCATCATAGCTAAAGAGATAGACTGGCCAGGCACAGTGGCTTACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCTAGTGGATCATGAGGACAGGAGATTGAGACCATCCTGGCCAATATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTAAACCCAGGAGGTGGATGTTGCAGTGAGCCGAGATCGCGCCACTGTACTCCAGCCAAGGCAACAGAGCGACACTCCGTCTCAAAAAACCAAAAATAATAGATTGAAATAAAACGGGCAGCTGTTGGTCTAAAGCCAAGGTATGAGAAGCATGGCAGCTCTGCTGTGGTCCCTGTCCTGTGAGCCAGGTGAATCTCATCATTTCAGAAGTTCTCTCTTTAGCCTTAAAGCCACTACATCAGCACTGTTACTGCTTTATCCAGCCCCTCAGCTTTCAGGAGCATTGTTCCATAGGTCATTGCAGGCTGAGTGCTTCTTGGTGGGATTAGTTCTGCTGCCTCTACCACGTAGGTAATGCCTTTGTTCCAGACTGTCAGTTGTTTAATTGGGAAGAGTGTTTGCTTCTTGCTGCACTAGGTCTGAGCTGGATCCCTGAGTTTTGCCAGGTTCTAATCTTGCATTTTCTGTATCCCATTTTCAGGAAGATCTCTTAGCTGTTTGTTCTTCTAGGATACAGTTGAGGACAGAGTTGCAGGAAAATGTGATGGCCCAAAAGAAAGCAGGAAGGAAGGAAGAGAGGGCTTCTAGTATAGAGTGATCTCTGCTTTCACCTGCAG
Seq C2 exon
GTCACTGCTGAAACTCAAGAGAAAGAAGACGTTATCACACATTTGCAAGAGAAGGTTGCATCCTTGGAGAAGAGACTAGAACAGAACTTATCAGGAGAAGAACACTTGCAAGAACTCCTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935:ENST00000373555:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=NA C2=0.555
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=FE(30.1=100),PF045827=Reo_sigmaC=FE(24.8=100),PF048597=DUF641=FE(40.2=100)
A:
NA
C2:
PF104734=CENP-F_leu_zip=FE(33.3=100),PF045827=Reo_sigmaC=FE(27.5=100),PF048597=DUF641=PD(38.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development