BtaINT0067825 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95890071-95896375:-
Coord C1 exon
chr11:95896264-95896375
Coord A exon
chr11:95890197-95896263
Coord C2 exon
chr11:95890071-95890196
Length
6067 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATCTCTGCTTTCACCTGCAGGTC
3' ss Score
13.2
Exon sequences
Seq C1 exon
AGATCATGTGACAGCTTCGAAAACAGGTGCAGAAAATAAGATCACAGTCCTGGAGCAAAAGGAACAGGAGCTCCAAGCATTCATTCAGCAACTTTCCATTGATTTGCAAAAG
Seq A exon
GTAAGAAGAGTACTAGGAATGGACCCAAGTTCCTAGGATTCATGAATGGGGTAAAAACTAAACCTGAAAAAATTTCTGTATCAGAGTGTCTGGTGAAACTTCTGTTTCTCGTGCAGCCCACAATGCCCTAGTTCCTGGTGTAACAAGTCTGCCTCCACATGGGCTTAGTTGCCTCACAACAAGGAGCACCCGATAAATAGGTCTTATGTAAATGAATGACTGTGATACAAGTTTCATCTCCACATCAAACAAAAATCTAGATACCTATAGTGTTTTGTCTCAGAAGCTTACTGTTTCCTTATAGAACTCAAAACTTTCTGTTTGACAAGAAAAAAATTCACATCTCAAGAAGTCCCAAATAAGTGAATTAGATTTTTCAAATGCAGGATGTGTGCCATAGGGAGAGTGCATTTCCAGTGCAGTAATCAAGGAATTTTTCCTGGAGTAATTGGAATTTCAAGGATGGGTAGGACAGCCCGAAAGCAAAAAAGACAGAAGGGTACAGAATACATTTGGGACTTTGAGGGTGGAGAGGATAACAGACATAAAGCTTTGGGGTTTGTGGGACTGTTTGATATCAATTAGAACCATCCACTCATTTCATAATTGGAAAAACTAACTTTCCAGACTCTGGTCCCACTAAGTTACCTCATTCATTCTAAAACTATAATTTGAGCTTTATTATGTGTCAAGCACTGTGCTCTGTGCTGAGCAAAACAGATATCAATCACCCTTGCCCTTGCGGAACTTAGTCTAGAGGAGCAGTGAGACATTAATCAATAATCACATAGATAATTGCAAACTATGATGCATGCTCTGACGGAAAACTGCAGGATGCTGTGAGATCTTTTAAGAGGGCATCAAATCAAGTCTAGTGTTGAAGTCACAGAACACTTCCTTTGAGGAAGTAATGCTTGAACTGAGATGAACTGCTGAAGCAGGTAGGCGGAGTGGTGGGGGGTGGTGATGGCAGAGAATTTTAAATAGAGAATAGCACAAACCATAAACCCAGACATCTGGAGGCAGCAAAATGAGTGACACCTTCAAGGAAGTGGAAGAAGGCTGGAAAGGGCACACAGTAAGGGACAGAGTTGCATGGCTGTTAGAGGAAACACTGAAAGGGTTTCCAGCTGGAAGCTCTTGCATTGTCCAGGCATAACATGGTGGCTTTGACAAGAGTCGGGGGTGGAAATAATGGGAGAGAAGACAAATATAAGAAATAGTGAAGAGACGGACCTACTTGGTATGTGGTAAATACAGGAGAAGAGCGAGAGTAAAGGAGGTGTTAGGGGTGATTATTGGGTTTCTAGCCTAATCAGCTCGGAGAAGGCAATGGCACCCACTCCAGTACTCCTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTTGCTAAGAGTCGGGCACGACTGAGCGACTTCACTTTCGCTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGCGGAGCCTGGTGGGCTGCTGTCTGTGGGGTCACACAGAGTCGGACACGACTGAAGTGACAGCAGCAGCAGCCTAATGAGCTAAGTGGCCAATGTTGTCAGTCATCAGGCTAAGAGAGCACTAGAGGAAGGGCAGTTTTCTCATGAAAATGAGTTTAGAGTCAGCTTCTGCGTTGTCCTTGTTAACACTGAGTAGGTATGAAATAGTATTTATGACATGTAAGTAAGATCAAAAGCGTAACAAGCTAATGAACCCCCACACAGCTACTATTCCCGCCTGCCATGTTAAGAAAAGGAATGTTTACCTTTGAGATGCTCAGTGTGCCCTTTCTATTCTATCCCATTTCTTTCTTAAGTCAGAAATTACATTGCTTTATAATTTTATCCCTAAACATCATCTTCTTTCCTGTATCATGCTTGTTGTTCAGTCACCAAGTCATGTCCAACTCTTTGCAACCCCATGGACTGCAGCTCACCAGGCTTAAATGAAATGCTGTAGGTATTTTTCTAAAACTAGCTTTCTGTGCTCAAGATTATATTTCTGAGACACATTCATATGGACACACGCCGCTATAATTTAATCTTCTCTCAACTGTATAGTATGAAATTACTAGAGTTTATTTATCCGTTCTATTGACAGTGAACATTTTTTCTGCTTCTTTACTTTTGCAAACAAGGCTGTTGTGAACTTTTGTCTGCCTCTGAAAGAGTTAACTCTGGGGCCTTCCCTAGTAGTCCAGTGGCTAAGACTCCACGCTCCCAATGCTGGGGGCCCAGGTTTAATCCCTGGTCAGGAAACTGGATCCCACATGCCACAACTAAGACCTGACACAGCCAAATAAATTAAAAAAATGTTTTTAAGAGTTAACTCTGGGGTCTATTTGAGATGTGAAAAGTTTGGGTCAAAAGATTTGTGCTTTTCCACTCTATTAGATAATGCCCAGTTTTTTCCATAGTAGTGGTAGTTATTTACAAACTTGTACCAATGGAGTATGAAAATTTGGGTTGCTCTGCTTCCTTGACAAGGTGGGATATGGTCAGTCTTTTAATTTTTGCCAGTCTGGTGAACATGAAATGCATCTTCAGATTTTCTTACCATGATTTTTTTTTTGGCCGCACTGTACGTCTTATAGGATCTTAGCTCAGGATTGAACCCAGGCCCTCAGCAGTGAAAGCAAGGAGTCCTCACCACTGGACTGCCAGAGAATTCCCTCTCACCATGATTTTAATTTGCTTTTCTCAGATTATTAATAAAGTTGAGCATATTTTTATGTGTTTATCTCTCGTTTAACTGTCTATCTAGGTGCTGGTTCAAATCTTTTGCCCATTTTCTATTGCATTTATGTTTTTCTCTCATTAATTGTTGGAATTCTTTATATATATACTGGCTACCATGCTCCTTTGTTAGTTGTACGGGTTGCAAATACCTTCTTCCAGTTTGGAGCTTGTCATCATACTCTACAGCTTCTTCTGTTGAATATAAGCTTTTCATTTTACTATAGTTGAATTTATTGTTTACCTTTAAGTTTATACTTTTGTCTTTTTAAAAAAATCTAAAAAAAAGAATCTTTCCTCACTCAAAATCATAACATTATTCTCCTGTATTATTTTCTGAAAGTTTTATAGTTTTGACTATGTTTCTAGGTCTTTAACATGCCTGAAATTTGGTTTTCTGTGAGAAAGGGAGCCGTGTCATTTTTTTTTTTAATTGTTTCAGTACCATTTATTGAAAAATCTGTTTTCTCACTGATCTGAAATGCCAGCTTTATCACAATTCAGTTTTGCATTTGTATAAAGAAAGCTGAGTGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCCACCAGTCCATCCTAAAGGAAATCAGTCCTGAATATTCACTGGAATGACTGATGCTGAAGCTGAAACTCTAGTACTTTAGCCACCTGATGCAAGAACTGACTCATTGGAAAAGATTCTGATGCTGGGAGAAATTGAAGGCGGGAGGAGAAGGAGACGACAAGAGGATGAGATGGTTGGATTGCATCACCAACTCAATGGACATGAGTTTGAGCAAGTTCCGGGAGCTGGTGATGGACAGGGAAGCCTGGCATGCTGCAGTCCATGGCATCACAAACAGTCAGACATGACTGAGCAATTGAACTGAACTAACTGAACCATGTATCCTGCCATCTTGATATACTCACTTTTAAGTTCCAGGGTTTTTGTTGTTGATTCATGTGGATTTCCTACACAGATGATCATATCATCTGCAGACAAAAGCAGCTTTATGTTTTCCTTCCTTATCTCCGTTCCTTTTATTTCTTTTTCTTGCCTCATTGCATTAGCAAAGACTTCCAGATGATGTTAAAAAGAAGTGGGAAGAGGGGACATCCTATCTTTGTATCTGATCTTAGTGGGAAACCTTTGAGTTTCTCACCATTAAGTGCGGTGTTAGCTGTAGCACGTTAAGTGCTGAGGGCTTGAAGTAGCACATCCAGAGGTGGGGAATCATTCCATGTGGGATATAGTGCACAAGAAAACTAACTGGAAATTGGCAACTGATTCTTTCTTCTGTCCCTGACTCTGCCCTACACAGTGACTTATATGAGACTTATTTGGTCTTTTGGTTTTTACTAGAAAGGGTCAGCTATATCTCTCAAGTTCATATTGATGTGTAGTGGACGTAGTACAGGCTTTGGATTAGGAAGGCTTGGGTTTTGAATCCTTGTTCTGTCAGCACAGTGTGTGCTATTGGGCTAGTTCCTAAACTTCAGTTTCCCTGTAAATGGTCAAGTAAAGGGTGATTGTAAGGACTAGAGGAGTGGAAAGTGCTTGCACATGCTCTGCAAACTGTAGTTGCTCCTGCACCATACTGTTTCTTATTCCTGTTGTCAACATTAGAAGGAAGAGACCCATTAAAGATAGGTCAGCCTGACCAAAACTGCATTTCTTCCTATCAAACTCCCTCTTACCTGTGTTTTCTCTGCCTTGCATAATATTACCATTCAACCAGGCATCTGAGCCACAGACTTGGGAGTTGTCTTCGCTTCTTTCTTCCTCTCCACCCAGCCTCCTGGTCATGTTGAACTTGTCTCTTTACTCCTTTACACATACTGCCTTTTACACAGAAAGCTTGTTCCTCTTCCCCACCTTCCACCTGGACTTGCCTGCTTAGGAGGCCTGATCAGATTGCTGGGTTAATCCCTTCTGCCTCTGATGTCTCATGGCACCTTATATGTCCCTCTGTTGCAGCATGATTGTATTGTTTTATAATTAATTACGTGTATATCTCTGCCACCAGCCTCCATGCTTCTTTGGGTCAGTAGCTGTAGCTGATTATATCCCTGGGAGACAGCACAAAGAGTATAGGCTTGATCAAAGTTTATTGAATTATGCAGTCTTGAAACCGTTCTTCAAACTTCTGCTCTACTATATATGTTGTCGCCCCTGTGAGAAATCAGAATGGCAGAAGCTTCTTTCTAAAACCTTGTACCCAAGTAGCTGCATCTTATTCTGAGGAGAGAATTGGCTGAGTTGCAGTCTAAAGTTTGTGGCTTGAGTTGGAGCAGCAGAGCATAAAGTGAGGGAATTTGAGGAAGTGAATTATATATGAGGAGGATCTAGTCTTCACAATGAAATGTTGATGCTGTACGACCTTATTTTGGAGTGAAGAATGGGCATCTTCAGTGAACGTAAGGACCAGTGAGGAGCTAAGAAATGATACAGTGAAAGCTTCCTGGATCCTCAGTTTTGATGTTGCGCAGCATCGAAGATGGGCAGTAGTGAAGGGACAAAGTTAGTCCCAGCCAGCACCGCCATCACTGCCATCATTGCTGAAGAGGTAGACTGCAATAAATACGTGGGCAGCTGTGTACCTGGGCCATGGTGTAAGATGCTGCTGTGTGTGGTTCACCTGTGATTCCTGTGTTGTGAGCCAGGGTGAATACCACCAGTTGTTTCAATTCTCTCTTCAACCTGAAGGCAGCTACATTGTCATTATAAGGCTTCATCTAGCCCCCTGTTTCCAAGCATATTCTTCTGTAGGTCATTATAGGATTGGCTGGGAGCTTGAGTGGAATTACCTCCGCTGGTTCTTGGCATCTGGTATAAAGTTGTAGGTCCTGTTGGACTGTAGATTAGTAGAGTTAAATCTATGCTTGATGGGAGTGGGAGGAGCATTCCTTTAGCTGGTAGATCATGACAATACAAAGGTTATCTTAGAGAGGAGGAACATCTTTGCAGCGTCCTGGCTAGATTCCACAGAGGCAATAGCATCCTTCCTTCCCAGTCGTCAGTTGCTTAAATTGGGAGCATTTGCTGCTTACTGCACTAGGCCTGAAACAGATACCCAAGTGGTGTTGGGTTCTGATCTTGTATCTTTTCTGTTCCATTTTCAGGGAAGATTTCTTGGCTGTATGTTCTCCTAGAATGCAGTTGGAAACAGAATTTCAGAGAAACATGATGATTCTAGAGGAGGTGGTTAGGGAGGGAGAGTGAGTGTAACATAATCTCTGCTTTCACCTGCAG
Seq C2 exon
GTCACTGCTGAAACTCAAGAGAAAGAAAAACTCATCACACATTTGCAGGAGAAGGTCGCATCCCTGGAGAAGAGACTAGAGCAGAATCTCTCAGGAGAAGAACATGTGCAGGAACTTCTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=PD(25.5=73.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development