RnoINT0066230 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23331293-23336890:-
Coord C1 exon
chr3:23336779-23336890
Coord A exon
chr3:23331419-23336778
Coord C2 exon
chr3:23331293-23331418
Length
5360 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GACTCTGCTTTCCCCTCCAGGTC
3' ss Score
12.63
Exon sequences
Seq C1 exon
AGACCACTTGACAGCTTCAAAAGCAGGTGCAGAACATAAGATTGTAGTCCTGGAACAAAAGGAACAAGAGCTCCAGGCGATCATCCAGCAGTTTTCCATTGACCTACAAAAG
Seq A exon
GTAAAATCAGGAGCAAGAACAGGGACTTCCTCCTGTGTCCCACAGGTTCCACTTCCTGTTCTAGCCCAATTGTACTCATGGGGAGCAGCTACTCGCTTCCCAGGTTACTGAACAGAAAACATGGTATTTCCAGATGTGGTGTTACATACCTGTAGTCTAGGAACTTAGGCTTAGGCATTTGAGACTGGCTTTGAAAACAATGTAAGACCTCCATTTCTTTACTTTTTTTTTTCTTTCTTTTTTTTAAGAAGTGGAAGAGGTGAATAGGGAAAAGAAAACAGTATCCTAACAGGAATTCTCAAAACATAGTATTTATATATTTTGGTTTTGATTAGTCTAAATTGCTTAGGGTGGTCTAGAACTTAGAACTATCTAACCTCAGTCTCCCAAGTAGCTAAAATTAAAAGCATGTGCCACGGTACCCATATAAAGCAAAGCATGTGATTTGTTTGTTCTAACCATGTCTTATGGGCTAAGGAATTTAGTGCAGCTGTAGAGCACATGCTTAGTATAAGGCCCTGAGTTCAGTCCCTAACTCCATGAAGAAAAATATCATGTCTTAAACTATTACATAATAGACCTTGAGTAGAAGAACGTTTAACAGTCACTGACATGCCCAGAATTTTCCTCGGACTTAATATCATTTTTATTTTGTTTTTGATTTGGTTGAAAGAAATGGATTGCTCAGTATAAAAAACTTTAGGCCTGTGTTAAATTCTGAGAATAGATAGATGAACAATAATAACCGAGTATGAAAGACTCTTCTTTATTCTTTATGTGTGTGTATGTATGTGTGTCTGTCTGTGTATCTGTGTGTATATTAGATTAGAAGTCAACCCACAGTAGTCAGTTCTGTCTTTCCACTGGTTAGGTCCTAAGAATCAAACTAGGCTGTATGGTTTGTTGGCATGTGCCTTCACCTACTGAGCCATATCATCTGCCATGAAAAATTATTCTATTTATTTCCCTTTATATAATATATATGGTTTATTTGTTTGTGTTTTATGTATATGAGTGCTTTGTCTACATGTACACCAGAAGAGAGTATCAGATCCTAGATCCCATTACAAATGGTTCTAAGCCATCAGGTGGTTGCTGGGAATTGAACTCAGGAAGTCTGGAGGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTTTAGCCCCTTCCAGGGATATAGAGATAGAAGGTGTAAGACATGACCTCCTCCTTTTCCTTTTTACTTTTTTTCCCTTTTTTTTTTTTTTCTATTTTTCTTTTTAAAGAGTTGTTTATGGGGGCTGGAGAGATGGCTCAGTGGTTAAAAACACTGACTGCTCTTCCAAGGTCCTGAGCTCAATTCCCAGCAACCACATGGTGGCTCTCAACCATCTGTAATGACATCTGATGCCCTCTTCTGTTGTGTCTGAGACAGCTACAGTGTACTTATATATAAAATAAATAAATCTTTTTTTAAAAAGTTGTTTATTTCAAACTAGGTTGTACAACTTGTTGGCATGTGCCTTAACCTACTGAGCCATATCGTCTTGAAAAGTTTGACAGATTTTTACCAGTAATAATGTCAGTATATAATCACTAACTCTGATAAGTGCACTGAAGGAAGTCTTTGAGATGCAGTGGGAGCCTGTACAGGCCATCAGATCGGATCTCCTCATGGGATCTGAATGCCTCCTTCAAACCTGATGATACCCTGCTGAAGTTGGAAAGGGAAGGATGAGCAGAGAGAATCTCAGTCAGGAAAACCCTGAGACAAGTAAAAGAACTGGCACATTAAAGACTTGGAGGAGTGTAGCATGTAGCTTTTGCTACCCTGCCTAAGCTCCGGGAAGAGGCCACGATACCCACCCAGTTTCCCTTGAATCCATGGATAAAGGATACACACACAGGTTGCTCATTTTCAACTCGCCTTCTTGGCACAATTACTGGGTGCTATCATCTCCCACTTGGAAGATACTGTATTCTTAACAATATTCTTATCTCTGCACCTCCCACCTTAGCAACTTTGTGCTAAACATCCCTGACCACATGCCTATAGGAGTGGCCACAGACCACCACTCTTCCTCAGACCTCACATGCCTGCTTGGCTTTTGCCTTTTCCTTCAACCCAGCAATTGGCCCATGGTTTCTTTACTGATAGATCAAGAACCAATTGGAGAACAGGACCTTAGTATCAGAACTGCCCCTACACCTCACCTTTTCTGTCCAATTTAAAAAAAAACAAAAAAAAACAAAAAACCTCCCAGACATATATTGAACAAACCATATCATGTAAGTTACACATTATGATATACAAATGACATTCCAGTCTATCATATTTGTCAATTAGATAAAGTACTCTACCATCATTAAAGAATTATGATTCTATCCCTACATTATGTTTAGATTTTAGCCTGTAATGCTATCTGAAGACCTATATAACCACTCTATAACCTCTCGCTCAATTTTAAACAACTTGGGTTTGATCATGAGATTAAAAGTAGTCTTCAGCCACATCAGAAATCTGAAAACGAATTAAACATTGCCCAAGTATATATATAGAAAGCACTAAACATATCTTCTCAAATAGTAGGAGTCAAGTGTAAACAATTGACTACCTGGACAGCCCCCTAATTCCTCAGAATGTTGGAGCATCAGTCTTCAGCCCAGGATCATCTGACAAGCCTTTGCAAAGCACAATTATTAAGGACTGCTTACCCTATCTTCTCTCTCCATCCCTCTATTTTTATCCATATGTTTGCATTGTATGTGCCATTGCATACATGTGGAGGTCAGAGGGCATCCTTCAAGAGTCAGTTCTTCTACCATGTGGGTCCCAGCCATTGAATTCAAATGGTAAGGCTTAGCAGCATAATGATGGTAGCATTGCTAAGAGTAATGGCGAGTGGAGGTTGGACAAACTGAAGAAATGCTGGGGGGACTAACAAAACTGAATATCTTTGTTCCTGGCTTGAGTGTCTGAGTTGCTGATACTACCAGTCATTACTTAGAGAACATTACAGGAAGGTCAGTTAGTACCAAGGTCATGAGAGTAGGTTTTTATTGTTGTTCTTAATAGCCACATAGGACTTTATAGACTTTACGTGCACCATTATACCCTACTTCTATATCCCCAATCTTAGAGTAACTTTTATTTTAGGCTCATCCATGTGAGGCTTAGGTATGGCTAGAGAGTAGATGAAGAGGAAGACTTAGAAAATAAGCAGATTTAGCCACAGAGATTGTTTCTTGTAACAGTTTCATTAGTCTGCCCCAGGTGTGAAAGGCCTGATGTAGCACAGCCAAACCAAAAGCATTTTAGGAATGAGATCCATAAGAAGACTAAGTGGAGCCGGGCCACTGACTCTTATCCTGACCCTGGCCTTATGTTCTTCTGCCTGACCAACACAGTAACTTGTGTAGGATGGCTGGTCTTCAGTGGAGTGGGCCACCATAGTATTCCTCACGTTCAAATTATTATGCAGTAGAACAAGTGCAGGCTTGTTTGCATCCTCACTGTGTTGCTGAGAGATGTCTGGTTTTTTGTAGCATAGACACAGTAAACAGTGATTGTAAGGACTAGAGATACTGGGAAATGCTTATGCATGCTTGCGTACTGGAGCCACTGCTGTTGTGCTCCATGCTTCTTGCAAGTATTTCTATTATACAGGTTTGCATTATAATGAGAAAGGTTTGAGTGAAGCTGTTTTCCTTACTGTCTTAACATTCATCTTTCCTGCCTTATACACTTTCTGAATATTATGATTTACCTCATCATCAGCCTTTCTGGCCTTTTCCACCCAGTTTCCTGGTCCAGGTGAACTTGTTTTAGCTCTTTGTATTATCTGTTCCACTAAACAGCCTTAAGGGAGAAAGGATTTATTTTAGGTTACAGTCTATCTTAGTCAGTGATCTATTGTTATGAAGAGGTACTATGACCATGGTAAATCTTACAAAAGAAAGCATTTAATTGGGCCTGGCTTACAGTTTAAGATGTTTATCATCATGGCAGGGAGCATGATAGCATGCAGGCATGCACTAGACCTTGTAATCTTTCAAATAGTTACACTCCCTGGTTATTAAGCATTCAAACACAATAGCCTATTGGAGCATTCTTACTCAAGCCACCAGTCCATTATTGAGGAGATATGTAGGTGGCAGGAACTTCAATCCACTTGTCACATTATATCTATAGCCTGGAGCAGAGAGGAAAGAATGCATGCTCAGTTGTACTTAGACCCCTCTGCACTTAACATAGTCTAAGATTTCAAGCCAGGGACTGGGCTGGATTTCCATATCAATCAATAAAATCAAGACAATCCCCCTACAAACATGCCACAGACTAACCTGATGTAGATGACCCCTCGCTGAAATGTTCAAAGGTTATTTTGGATTATGCCACTGCTCTTTACCCATAATGCTGTTTCCTCGCCTACCTGTGTGCACCTGTACTTGCCTGTTAGGAGGCCTAGTCCGAGCGTCTTAGAGATTCCCTGCTGCCTTCACTTCTCAAGCACCTTATATGCCCATGGCTTACAGGATGGCTGTGTTGCTTTGTTGTTAGTTCTGTGAGTCATTCATCTTTACGCCCATAGATCAGACTTGTTGGGGGGGTTTGTACCTGTAAATTTTTGGAGAGCAACAGATAATGTTTAATCTTGACAAAAGCTTTTTAAATTGTGGGTTGTGCATCCATTCTTCAGACTGTTCCTACATGTAGACATGAGTTGAAGTCTGGTGACCTGTACTGTTAGGAGACAAGAATGGGCATCCTCAGTTGATGAAGGACCGCCACAGATCTTCATGCTTGTGTGTTCAAAGCTTCCTGGATTCTTGGATCTGACATTGAACAGCATATGGTGATTGGTGGTGATGAAAAGAACAATCTCCTGATCTGTCACCATCATCACTGCATTCATTGACAGAATGTCAGGCTGAAGTGTCACTGTTGTTCTGAGCCCGAGCTGTGACATTCACTATGGCCCATTGGTTCCTGTCATTTGTTTCAGAAGTTCTCTTGATGTCTTTAAAGCAGTTATCTTAGCTTTATCCCTCTGGACCCAGCTCTTGAGTTTCCAAGAATATCATTATTGTTTTTTGGTTTATGGGGTTTGTTTATTGTCTTGCTAGGGATTGAATCCAGGGCCTTAGGAGTGTGATTCTATAGATCATTTCAGGGACACTGGGACCTTCTTTAATACGATTGCCTTGCTGCCTCTATCAGACTATCAGGTGCTTACATTGGTAGTCATGCTTGCTTCTTGTTGCACTAGGTGCCTTCACCTAGTACCCGATTCATGCCATGGTAGTCTCCTTTCTTTAATGAGGTAAGAGGGCATATAGTCTAAAGAGGACTTAAAGAATGACTCTGCTTTCCCCTCCAG
Seq C2 exon
GTCAATGCTGAAACTCAAGAAAAAGAAAAAGTCATCACACATTTACAAGACAAGGTTACATTCTTGGAAAAGAGACTAGAACAGGACTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]