GgaINT1031099 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:9568761-9569078:+
Coord C1 exon
chr17:9568761-9568872
Coord A exon
chr17:9568873-9568982
Coord C2 exon
chr17:9568983-9569078
Length
110 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AAGGAATTCCTCTTTTTTAGGCT
3' ss Score
6.01
Exon sequences
Seq C1 exon
AGATGAACTGATGACAGCTGAGAGGAATGCAGAAGATAAGATCACTGCTCTGGAGTTGAGAGAACAGGAGCTACAAACTGTCATTCAGCACCTTTCTGTAGACTTGCAAAAT
Seq A exon
GTGAGTTTCACATAAGGGGTTTGATTCAAAGAGCTCCCTGTCTACAGAAGTTAGATTACGTATCGACTGTGAAATCTTAAGATTCAGAGCAAGGAATTCCTCTTTTTTAG
Seq C2 exon
GCTCGAGTTGCTGGTTCTGGATGTGAGAAGAGACTGGAAACGTTACGGGTAGAGCATGAATCTCTGAAGGTGGAATATGAACAACACAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACTGATGACAGCTGAGAGG
R:
AGCTTGTGTTGTTCATATTCCACCT
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]