GgaINT0126288 @ galGal4
Intron Retention
Gene
ENSGALG00000000972 | PBX3
Description
pre-B-cell leukemia transcription factor 3 [Source:RefSeq peptide;Acc:NP_001025849]
Coordinates
chr17:9805371-9810344:+
Coord C1 exon
chr17:9805371-9805612
Coord A exon
chr17:9805613-9810153
Coord C2 exon
chr17:9810154-9810344
Length
4541 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCTCCTTCCTTCCTTTGCAGGCA
3' ss Score
13.44
Exon sequences
Seq C1 exon
GTTTGAGCATCCGAGGAGCCCAGGAGGAAGACCCTCCCGATCCCCAGCTAATGAGACTAGACAATATGCTTCTGGCAGAAGGAGTCTCAGGTCCGGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCAGCAGCCTCTGGAGGGTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAGCTGGAGAAATATGAACAG
Seq A exon
GTCAGACATCAGCCTCTCAGTTGCTTGTGTCCCCACTGCTGCCCTTGCACCTCCGCTTGCCAGTGGCCGGCGCCCAGGGCTCCGGTGGCTCCCCCTGTTCCGGCTGCCTGTGCTGCCTGCGAGGGCCGCAGGGCGCATGTTTGCATGCCCAAGTGTTCTCTGTTGTCTGTAACCACATAAAGTAGCACCAGAGCCAGTATTCCCCCTTGTAGAGCCAGCCCCAGATGGAACAGGCTGTGTGTGCCCCCGGGTGGCTCAGGAGACACAGCATGGCCACGGGGCTGGGTGCAGTGTGTGTTGTGTGCGTGCTGCTGACCACCCACAGGGGTGGGGAGGCTCTGGTTTCTCAGTGAACAACTGCACTGGAGCACAGGGAGTGGGAAGTGTGGCTCTATGAGACCTTCAACCCTCACAAGCTTCTGGTGGTGCTTTTGTTTTCCGCTCCCAGCGGTGTCCTGACAAAGCTGACAAACCCTGAGCCTACCAGCTCAGTGAACTCAATCAGTGGTGGTTTCCTGAGCAGAGTAGGGGAAGCCCTGCCCTTGCCCCTGCCTGTCACAGCACAGTGTCGCTCTGAACAGGCCCAAACCACAAACAAGATGAGGAGTGGCAATAAAATCTCTTGGAGCTGTGTGAGCAGAGAACCATGTGCCATGAGGCTCCGGCTGCCTTCCCACAGCTTCCCCGTTTTGCTGTGCAGGGCCAGGTGCCTCTGTGCCAATCTTTCCTCCCTCAAGTGACCCCATTCCACCCTAAAGACACCAGTGTCCTGTGGGGCCCCTTCAGCTCTCACACAGTGGTGCCCAGTGTACAGCCTGCAGCCTGACATGAGAATGGCTGCCAGAAGAACGAGCGCCTTCCAGCAGGAGTGTCTGCTGCAACCACGGGGACGCAGGCTGGAAACAGATCTGGGGCTGAAGCAAATGCAGGTCGGTGCTTACAGCTGTTTCCTGGCACGTCTCCTTTGCCTCTAATAAGTTTAATGATGTGGGGGAAGCAGTAGCATTTTTAGCCCTGTAGCTCCATTTACAAAGGTTTCAACTGAAATGTCACAGCCATCCGTCCACACCACGGGGAACTTTGGAGGATGCTCAAGTGCTGCTAGGAGAGAGAGAGAGGTGAAGCTGCCCTGAAACATGTACGCTTCCCCCGTTGATCCTGACACCCAGCAGCGTCTGCTCTACAGAAATATGGTAATTTCCCAGCCCTGCAGCAAACTGTCTCCTGCTCGCCTGTCTCAGAGCAGCGCCTGTCTCAGCAGTGGAGGGCTGGGGCTCAGCGTTGCTGTGCGCCTGCAGCTGGGCTGCTGCCACAGAGCAGGGCCACCCCGCACCCAGCAGGGCAGCTCCCGCAGCACTCTCCTGCACAACCCACACCGAGTCCTTCCTGAAGACACTCCGCAGACAGAGTTTGATGCTGACGTTTGTTGCCAGCTAGGGGAATGTGCTTGGAAAAAAAAGAAAGGAAAATGGAAAGTGTGTCATGCCATCACACAGCTCTCCCCTCGCTGTGTGCCAGGAGAGATGGTCGTACACAGGCAGCTCCTTCCATAATTTACAGCTGCTATAATAGAGATGACATATTGAAAGCTATCTTCTATAATTACACTGAAATACATTTTTTTGCTGTAGGCAAAAGTACTGTAAGGGTCCCAGGCCTCCTGGAGCAGCTGGGAACCTGCTTTCTGAGTTCACAGATGTCTTCTGGATTCACCCCAAATTGGGGTGAAGTGTGGCTGCTGGGAAGACACCACCACCCCCTCCAAGCGCTGTGGCACCGTGCGGCTGCGGATTGTCTGGGGCTGTTCCTTCTCTTTTCCTCTTGCTCGCCTTGATGAAGTGTTAAGGCTCGCAGAAGCATCCTCCACTCCTACAAGGTTTCTGAGCAGGTTAACAAGGCCATCACTTATAACCTGACATTATTAATAATGTCTCAGGCACCAAGCAGGGGCCTGAAAAATAGCACTGAAAGAGGGATCAAGTAGCTCGGACGTTATAAATAAACAAGAGAAAACAAGACAGAGCATCGGCAGCATCTGAACATGCTTCCACTCGGCTGTGCTGCAGGAACATCACAGATGGGAGATGCTGGAGAAAGAAATTAAAAGCACGCCCTTTGCACAGATGTAACCAAATGAGGGCTTGTCCGGCAATTTAAGTAGACTCAGGGAGAGATTTTTGCTTCTTCAGCTTCAAAACAGTTGATTTTTTATATCTGTGGAGAAATACTTTTCATAGAATAGAAATGCTTGAAAACACTTCTAAGTAACAGTTACCATTTGAATAGTAATTTGAAAATGAATTCCCTGGACCCGCAAATAGCAGCCATGATGCTGAGCTGCATGCCTGAAGCATTTCTCTAGTGCCAGAGACTTCCATTCAGCAGCACTGCCCAGGCAGCCTCAGCCCCCTACCCCTCAGGAGGGCCGTAGCTGCACTCAGGTGCGTCCTTCACCTCTGTGCATTGCTGACCAGGTGACCAAAGCTGGTCTTTTTGTCAGCGGTCAGATGGCCAAAGCAGAGGTTGGCTCAGGGTTCCCGCAGCGCACAGCCAGCGTGCGGCAGGGGCTGACGGCTCCTGGCACAGCGAGGCTGACACACTGGGCACCCCATGTCAGAGCTGCAGTGCTGCATGTGCCGGGTCTGCCTTTGTGTAGGACCGACCTGCAGTGGGACGGGGAGAAGGAGGGCACCCGGAGCAGCCCCTGCTCTGTGCCAGACGCGCAGCCTGGAGGGGTTGGGGCAGGATCCTTGTTTTTGGCGTGAGTGGAGACAGCGGGCAGCGGGAATGGGTGCTCTGTGGCACCTCGGGTAGCATTAAGCATCCAACGAGAAAGGAGGAAAAATCCACAAATGGCAAATGCAGATCAGACACCTGCACCTGGTGATACCTGCACCTGGAGTTCAGACTGTGGTGGGAAGCCCGGGGCACTGTGGCTGCAGCACCCAGCGCTCTGTGCTGCCCTGGTGGGGCACCCGCACTGCCCCCAGCCAGGCGCCGCCTCCCAGCGGTGTGGTGGGGAGGTAAATCAGCCCATAATTTGCTTTCAGTAGTGTAAAGAAAAAAAATCACTTTGCCTGAAGTGTATGCATCTTTCTTAAGGGTGTACCCAGATTTTAATTATCTAAATGTAAATACTTAACGAATTTTACTTAGAGTAATGAGCTAAAGTGCACACTACATAAATGAGATGTTCTAATTAATCATGTATGAACTACTGGTTTAAAGAAAAGCTATGTGAATTCTGCAAATGTTGGGCTATTGCCAAATTGCTAATCAGCATTTGCATTCATAGATGGCTTCACTTAATAAGTTGTGAGACGTTCAGCAAATGTTATAGGAAATTATGAGTTTTTAGATGCATAAACTTTTCACTTTTAACTCTTTCCCTCACACCAGCTATTGAAATGCAGGAGAATCACTGAACACGTACTCATAAGACAGATCATGGAATGATAGAATGGCTTAGGTTGGAAGGGACCTTAAACATCATAGAGCTCCAACCCTCCTGTCACGGGCAGGGTTGCCAACCACTAGAGATTGTAATGCTGTTTTTAACCTTGGCTTTAGGAGAAAAAGCTGAGCTGGAATCAGGTTGATACCTAACCCACGTGATCATACGTTGGATGCTCAGAGTGAAGCCCGTCAGCCTTGTTTGGAAGTGACTGCAGCTCTGCAGTGCACAAGGAGGGCTCCTTGTGCAACCACTGTGTGCCCGCCTTGGCCTCTGAGGAGCGCTGGTGGGGCTGAGTGCAGTGTGCCCTTGGCCCGGTCCCCACTGCGCTCCAACTCTCTGCCAGCAAACCTGGGGCTGCACCGCCATGCTCCAAGCAGGCAGCAGGCCCGGGGTTTGTTTTCAAAAGAGATAAAGGAGACATAAATCAGCATAGTTTGTGGCAGCTTGCAGCCTGCGTGGGGGGAAGCTGGGATGCCATCATGACAGCCACTTGGTCACGCAGAGGCTCAGATCAGCAGAGCCTAGTGATGATGCAGCCTGCAGAAGTTTATATCATCATGTCCTTTCGCCCGCATAGTCTGGGGCTGGTGATGGATGGCTGCTACAGCCTCCCCTCCCCAGCGCCTGGCTGCGCTGTGAGGCCAGGCTGGGCACAGCCAGGCTGTGACGCCATGTGCGGGAGGGGGCTGCACAGGGCTGCTCCAAAGGATTTAAATTCCCCAACCTTCTGTGGGGAGTCAAACCCTCCTGTGCTGCCTGCATTCAGCGTGCCCCTGGAAGTGCTGGCTACTGGCAGATTCTGCTCATGCATCTGAGCATGCGCTGGCACTGCTCACAACTGCCCCCAACCACTTACTGGTACCTTCCAGATCCCACTCCCCATCTACTGGCTGGGGCACTGGGCACTGCTTGCTTCATGGATAGGAAGGGATAAGGGCAAGGAGGAACCATGCCAGTGCTGACTGCTGCCAGCTGCATGCAATCTGCTCCCACGGCTGTGCGTGGGGATGGGGCTGTGTGAGGGTTTGCATGCTTGTTGGGCGGCACAAAGCAATTTCTAAGCCTCTCCTTCCTTCCTTTGCAG
Seq C2 exon
GCATGTAATGAATTTACTACACATGTGATGAACCTGCTCAGAGAACAGAGCCGAACGCGTCCCATTTCTCCTAAGGAGATTGAAAGGATGGTGGGCATCATTCATCGAAAATTCAGCTCCATCCAGATGCAGCTCAAGCAAAGTACTTGTGAAGCAGTCATGATTTTAAGGTCGAGGTTCCTTGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972:ENSGALT00000001436:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(40.6=100),PF040917=Sec15=PU(36.4=34.6)
A:
NA
C2:
PF037928=PBC=PD(31.0=95.3),PF040917=Sec15=PD(61.0=73.4),PF0004624=Homeobox=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]