GgaINT0126466 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7651383-7652398:+
Coord C1 exon
chr17:7651383-7651558
Coord A exon
chr17:7651559-7652058
Coord C2 exon
chr17:7652059-7652398
Length
500 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
3' ss Seq
AATAATGTCATGTTTGCTAGGTC
3' ss Score
7.08
Exon sequences
Seq C1 exon
CTGTGGCTGATGAAGCTGGGTACTATTTCTTCAACGGGAATTACAAAGTTGACAGCCCAAAGAACTTCAACATTGCAGGCACGGTGTTCAAGTACCGCCGGCCCATGGATGTCTATGAGACTGGCATAGAGTATATTGTTGCACAAGGACCAACAAACCAAGGATTGAACATAATG
Seq A exon
GTGGGCTTTGGCCTTTCAAGTATATGAGGCTAGGGTGGTGGTGAAGGGAGAAGCTGTGTTGGGTGGAGGAAGGGGCAAACCATCTACAACCAGACATTTAATTTGCTTCTGTGCAGCCAGCCAGAGACCCCCCCCACCATCTTCCTTGTGTCCGTGGGTTTGCCCAGAAGGGAGGGGGTGGTTATCTGGTCTCTTGCCCCTCATTCCCTGTAATGCCCAAAAAAAGGAGGTTTGTGCACATGGACAGTAACCTCCAAGACAGCTCTCCTATGCCTCAGTGGTTGCTCAGCTGCTGGGAAAGGAGCTGCTTGCAAATTTGCGTGTTGCGTACTAACCCTTGGGAAACTGTGTTGGGCTTCAATTGTATGAAGCTGGCAATGTGATGGAAAGCAGATTGGAAACAATGAGGTAGATACTCACCAACTGTCAAGTCCAAGATGAATCACAAACTTTGCATGCCGTATATTCACTGCATCCGTTAATAATGTCATGTTTGCTAG
Seq C2 exon
GTCTGGAATCAAAATGGCAAAAATCCATCCATCACGTTTGAATACACTCTCTTGAGGAAGCCACACTCAAATCTCCAGCCCATCTACTACACCTTTTCTGAGTCAGATAGCGAAGAAAGCAGGGAGTTTGATGGAGACGTGCCATTGGGTTTTATCCAACACAACGCAACCTATTTTGGGAAGATCTCCAGGGAAAGGATAGACTTGGAGAACCAGGTGTTTGGAAGACAGGACACGGAGGAAGATTTAAACTTGAGCAAAGGTCAGGAAACCAATGAGGTCTATGAAAGAGCAGAAACAATTGACTGTGAGCCAAAACTGAAGGGCAAACAACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.450
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(14.4=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACGGTGTTCAAGTACC
R:
TTCCTCCGTGTCCTGTCTTCC
Band lengths:
344-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]