RnoINT0013637 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5634828-5639099:+
Coord C1 exon
chr3:5634828-5635003
Coord A exon
chr3:5635004-5638741
Coord C2 exon
chr3:5638742-5639099
Length
3738 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
TACTTCTTCTCCTTTCCCAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
CTCTTGCAGACGAAGCTGGTTTCTACTTCTTCAACGGCAACTACAAAGTGGACAGCCCAAAGAACTTCAACATTGCTGGTACAGTGGTCAAGTACCGTCGGCCCATGGATGTCTATGAGACGGGCATCGAGTATATAGTGGCACAGGGGCCCACCAACCAGGGCTTGAATGTCATG
Seq A exon
GTGCGTGTGCCACAGGCTTTCGGGGATGGCAGGGGTCATGGGTAGTGGCTTCCCAGAATCCAGCTACTGCTGGGGCCTTGGGGTCCCTGAACATGCAGCCATATTGCTTCAGTCTGCAGTGGGGGTAAGGTGTTGTTCATTCATTCACTTAATCACTATTCACTTTCTTATTCGTTGACTCACTCAGATCTTAGTTCATTTACTTTGTCTCCCCTTGATTCATCAATTCATCCACCCATTCATTTGCTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCATTCGTTCAGTTCCTTGCTAGCCCATTCTGTGATCCTGTGATCGTTGGGAACCTCATGGAAAGCTAAGGACGGGTGGTTGGCCTTATGCTCAGTTGAGTCTTTCTGTCCCTCAAGGCCATACTGCCTCCATTGATACTACAGTGTTTGGGTTGCTTTTAGTCCCTTCCTCCCTGGATTCTCAGGGCTCTGAACAGCAGGCAGGGCAGAGTTTGGACCTGTTGTGTGGTTACCGTAGTTCCTCACTGCAGATCCATGGAGATACAGGTGAGCAGTTCTGACATTCTCTAAGACCTGCCACCTGTCGTCGGGACAGCTGGAGTCCACCACAGTGTGCTCTATGGCCTCACATTGTAGGTACAGAACCTGGGGAGGTTTATACAGTCTGTAAGTCGCAGGTCTGCCTGGGCAGGGACCACTTGTCTGCTTCCCTCTTGTGCTGGAGACATCTCTGGGGCATGCAGAAACTCCATGACACATTCCATACCATACCCCCACAAGCCTCTCTGTTTTTCCTGCAGCCCAGTGACAGGCTGTGCAGTCCAACTGGGTCTATGTAGAGCCTTCTCTACTGTGTCCCATTAAGCATAGGCAACATTTTAAGTTGCTTGCTGTGCGGACTAGACTGATGCTCTTAGATGTGGAGTGAGCTACCTCAAGAATTCCTGCTCATGGTAGAGGCTGCAAGATGCAGAACCAGGACAGCGTCCTGCCCTATAGAATGGTCCTGTTATTTTGAATTACAGGGTGACTGAATCACAGCTGTGTACAGAGGCCATGATTCACCCAGGTAGATGGAAACTGCTCAACCCAAGGCCACGTTAACGTGCTCTAGAAAAGTCACCACACCTGTACAAACCTCAGTAAGGGTCACTGCTTGGTTGGGCTTACTGCATCCAGGTGTACTGTGATGACAGGTCACTGGGGTCATTTTATCACTGTCAGGGCAACAGGAGCTGTGTGATTGAATGTGGGGTATGTTTTCTGCTCTTTTGTCCTTGAGGTCATGATGCTTCCATTTGTGATACCCCAGGAGGCAATGGTATCTCAGATTTGCTCTCTTGGGTATATCAGGGTGTTTGCTTATTAGCACTGTCAATAGAGGGCTGTGACCATCACTTATGTATTTGGGAATGAGGGACCCAGTGGACACATTTCTGGCCAGACTTAGGTCATTCCTCTGGTCGCTACTCATCCAAATGCTTGTGATGAGAACAGCAATGGCAGTTAGGGTCCACAGTCACCAATGACAACTCACACCTGGCTCCAGAATGCCCGGCCTCCTCTCCAGGTAAGAGGTGAGTAAGTAGACAGCTGTTGGTCCTTTAGAAGGGAACTGTGGGTTCCTCTGTCCTTCAGTGAACTCTGTGTCTAGAAACTGGTTCAAGAAATGGAGAAGGGGTCATAACCTTGCCTGGACAGCTGTCTCTGCCTCCTTCTCCTCCAGCTTGGTCTATCTCAATCAAGAAGGACTGTTTTTAGGGNNNNNNNNNNNNNNANNNNNNNNNNNNNNANNNNNNNNNNNNCAAGGCCCTGGGTTCGGTCCCCAGCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGACCATTTTTAGTCCAAGTGTCCACTCCCAAAGTGTGTGTGGGTGTTTTCTTTTCTGTTAACTGTCCATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAATGCATTGGGAGGCCACAAGGAGACTTCAGGGACTGTCCTCACTAGCCTTACTCTCCCGAGACAGGGTCCCTCACTGAGCCTGAAACTCATTACTTCAGTTAGGGTGGTTGGCTAGCGAGTTCCAGGGATCTGCTTAGCTCTGTATTCTGGAAGTCGTGTTGTAGAAGTACCCAGGTTTTACATGGGTGTTGGGGTTTTAAGCTCATGGTCTCATGCTTACAGAGCAAGGGCACTCACCACTACCGAGCCGCCTACCCAGCCCCTGTGGCACTGTTTTCTGCCGTTCACCTTTATTAATTGAGGGCCTGCTCCCATCCACAGCTGCTGGGGAGTCCAGAACTTGCCATAACCCCTTGCCACCAGCCCCGTCATGGGAAGGTGTCCCACATCGTGATATTGGTGATATCACAACGATATCGGTGTTGCCCAGCCACCCACCACTGAACAGAATGGGGCTTCCTGGTAGAAATCTGCTCTTAAATCACCCCTCTTGCATCTGCACTGTGTGGATCTCACTCACTCTCCCCTCCCCGCTAGCAGGCCAGCATGTTGTTCAGAGTGTAAGGGTCCTCCTGCTGGGCCATGATTCTCCTGAAGGCCCAGGAAGAACTGTCTCCTCTCTAGGACTTCCCTGGTGGCTGGAGGACATAACCTTACCATTGGTCTGGTGGTCAGGAGAGGAGACCAGGAAAGATCCACAAAAAGGCCAAGTTTAGAAAGAGAAGCTTTCTATGCCCGTTTCTCCTCAGGCTGCTTTAGCTGTTGAGATTTCACTATTTCCAGTTACCTTGACCCTAATCTCTCTATGCAGTGTGTCCCACTGCCGCAGCCTAACTCTGTCTGGTGGAACAGACACAGCAGGGTGAGAAGCTGACCCAGGCTCATTCTTGCTCTCTCCTGCCTTTTCTGCCCTGACGCTTTAAGCATCAGAGTTCCTTGACCACACATGCAGCCATCTGCTTAGCCTGAAATGGTGGTGGCTTTCTTTGTCACCTTGCTCCCATGTTGTGCCTTCCATAGTCCCTGATCCTGTCCCTAGACACCCTTGAGATGTCATCTGAGTGGAACTCATTGGTACTCTTTCTCTACCTGGTGTCCTGCTATGGCTTGTCTTGGCTTTGCTTAGTTTCCTGTGGTTCATCCATTGCCACCCTTCCGGGGCCTTGGTGTGCTCAGTGCTCTGGCCAGGCAGCTCAATGGCCCCATGAGAAGTTACTCCTGCTGTCAAATCCCCTACTGTCAGCTTCCAGATCTTAGGGGAGTGATTTTGAATAAAGGCACTGAAGTCTGTCTAGAGGAGAGGTCACTTGTGGTCTCTGTAGAGGCCTTGACTATCTCCCAGTAGCTCCATGACCAGATGACCCTTCAGTGCTGTCCTGGACAGGGGCATGGTTCAAATTTTAGTAGCTCATTAGTGGCCCTAGAAGTCTTGGGTAGATACAACGATATCAGTGCTATTAGGATTTCTGGCCCACAATGGCAATGACATACAGTGTGACCCCCATTCCTGCCCTCAAAGTGATCTGCCCCTCTGCCCCTTTTGGTGTGCCTCATCATGGTCTGTGGGCACAGCTGTCCTAGGACAGTTGCATGAGGCCACATTCTTGGGTCAGATGTGACTCCCTGGGAAAGACTCAAACGTAAGCAGGGCTGCTTGGTCTCAAGGGTCTTTTGGTGTTAAGTAGGAGCGAGGAAGGGAGCCAGGTCTTACTTCTTCTCCTTTCCCAG
Seq C2 exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCTATCACCTTTGAGTACACGCTGCTGCAGTCGCCACACATGCACCACCTGCCGCCGGTCTATTACAGCTTCTCGGAGGCAGCCTCTGAGAGCACCGAGAGCACCGAGCGCCAGGAGCTGGACAGTGCCAGGCTGCTGGGCTTCCTGCAGCACAATGGCTCACTCTACGGCCAGCCCTCCTCAGAGAGGCTGGGCCTGAACAGCCAGCTGTTTCCGCCTACAGCCCCTGAGGTGGAGCTGGGCCCAAGCAGAGGCCAGGAGACCAACGAGGTGTGCAAGCAAGCCAGCGGTGGGGTCTGTGAGGGACCTCCCAGGGGCAAGGGCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(14.4=14.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]