GgaINT0126466 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6978289-6979304:+
Coord C1 exon
chr17:6978289-6978464
Coord A exon
chr17:6978465-6978964
Coord C2 exon
chr17:6978965-6979304
Length
500 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
3' ss Seq
AATAATGTCATGTTTGCTAGGTC
3' ss Score
7.08
Exon sequences
Seq C1 exon
CTGTGGCTGATGAAGCTGGGTACTATTTCTTCAACGGGAATTACAAAGTTGACAGCCCAAAGAACTTCAACATTGCAGGCACGGTGTTCAAGTACCGCTGGCCCATGGATGTCTATGAGACTGGCATAGAGTATATTGTTGCACAAGGACCAACAAACCAAGGATTGAACATAATG
Seq A exon
GTGGGCTTTGGCCTTTCAAGTATATGAGGCTAGGGTGGTGGTGAAGGGAGAAGCTGTGTTGGGTGGAGGAAGGGGCAAACCATCTACAACCAGACATTTAATTTGCTTCTGTGCAGCCAGCCAGAGCCCCCCCCCCACCATCTTCCTTGTGTCCATGGGTTTGCCCAGAAGGGAGGGGGTGGTTATCTGGTCTCTTGCTCCTCATTCCCTGTAATGCCCAAAAAAAGGAGGTTTGTGCACATGGACAGTAACCTCCAAGACAGCTCTCCTATGCCTCAGTGGTTGCTCAGCTGCTGGGAAAGGAGCTGCTTGCAAATTTGCGTGTTGCGTACTAACCCTTGGAAACTGTGTTGGGCTTCAATTGTATGAAGCTGGCAATGTGATGGAAAGCAGATTGGAAACAATGAGGTAGATACTCACCAACTGTCAAGTCCAAGATGAATCACAAACTTTGTATGCCGTATATTCACTGCATCCGTTAATAATGTCATGTTTGCTAG
Seq C2 exon
GTCTGGAATCAAAATGGCAAAAATCCATCCATCACGTTTGAATACACTCTCTTGAGGAAGCCACACTCAAATCTCCAGCCCATCTACTACACCTTTTCTGAGTCAGATAGCGAAGAAAGCAGGGAGTTTGATGGAGACGTGCCATTGGGTTTTATCCAACACAACGCAACCTATTTTGGGAAGATCTCCAGGGAAAGGATAGACTTGGAGAACCAGGTGTTTGGAAGACAGGACACGGAGGAAGATTTAAACTTGAGCAAAGGTCAGGAAACCAATGAGGTCTATGAAAGAGCAGAAACAATTGACTGTGAGCCAAAACTGAAGGGCAAACAACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.430
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(14.4=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACGGTGTTCAAGTACC
R:
TTCCTCCGTGTCCTGTCTTCC
Band lengths:
344-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]