HsaINT0004317 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133547038-133554693:+
Coord C1 exon
chr9:133547038-133547213
Coord A exon
chr9:133547214-133554356
Coord C2 exon
chr9:133554357-133554693
Length
7143 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
ACCCACTTCTCTTTCCCTAGGTG
3' ss Score
11.81
Exon sequences
Seq C1 exon
CTCTTGCAGACGAAGCTGGCTACTACTTCTTCAACGGCAACTACAAGGTGGACAGCCCCAAGAACTTCAACATCGCAGGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTATGAGACCGGAATCGAGTACATCGTGGCACAGGGGCCCACCAACCAGGGCCTGAATGTCATG
Seq A exon
GTACGTGTGCCGCAGGCCTTGGGGGCCCCAGGGGCCCTGGGCACTGTTTCCCCAGAATCCAGCCACAGGTGAGGTCTTCCAGCCCGTGACGCCCCCAGGGCCACTGTGCGCGTGCACCCGGCAGCCTCACCACTCTGCGTGGGCTGGGGCTTCACGTTCAATCACTGTTACTCATTCACTTGTTCTTTCACTAACTCCCTCCCCCATTCATTCATTCACTCGGATTTTGGTTCATTTCCAGTCTCCCATTCACTCATCAGTTCATTAATTCATTTACCTGTTCACTTCTCACTCAACCACCTATTCTCTCACCCACTTCTTGAAATCATTCATTCCTCCATCCATTCACTGTGGCTAGCTTCCCTGGAGGACCAGCGGGGGTTCCGTGCTGGCCCATTTCCTGCCCTTTGGGAAGTCCACAGGGAGCTCGGGGCATTAAGGTTGAGGCTGGACCCCTCCCTACCCCACGGTGGAGGGGTTTATGCCCCTACCTAGCTTCAGGCTCCACCCCCTCCCCAGGCACTATGGTGCTCGGTCCTTAGTGCCAGGGCCCAAGGTAGTTCCCGTGGCCCCTGCCCCTCCCCTGACATGGCCTCCCCAGGATACTCAGGGGTTCTGGGGTGGGGCTCAGGGCCCGAGCAGTGGGCAGGAGGGAGCGTGGGCCTGTTATGCCCGACTTGCCACAAGTTCTTCTATGGCTAGCGTCTGGAAATGGAGGCTCTGGTGGCTTGGTGCCTCAGCACCGAAAATATGTAAAGGACTTGTCATGTCACTGAAGTCAGGTGACATCAAGAAGGGCAGTTGTGGTGCCCGTCAAGGCCTGCTGACTTTCCTGGAGGCCGAGGGAATACAGCAGGGTTGGAGCCACCCCACAACCTGGGCTGTTTTGGTTTCCAGATCTCCCTGTGGTGGGTTTCATTGCCTCATGTTGCAGGTCATGAAATGTGGGCACAGAGCGAGTGACTTGCAGTCATGGAATTGTGAGTGGCACGACTGGGCTTTGAACCCAGGCCTGCCTGGTGCCAGAGCCTGTTCTTTGTTTAGCTGCTGTGCTGGAGGGGTCTCTAACTGGGGGTGCTTGTCCATCTCCCCACACTGCTTTTTGGCTGAAGAGCTTTCCTGGTGACCCCGGAATCAAATGGGGGCCACGCATCTCTGTGTCTGTGCTTACCTGGTCCTGCCTGGAGCTGTGTCTGGAGGTGGACTGACCACTTGGCTTTGCCTCCTGGCTGCAGGGGCTGTTTTGTAGGTCAGGGTCCCCAGAAAATAGACTCTGAGGTGGGGGTTTGTGTGCAAGAGAGCTTGGGGGGCAGTGTCAGGAGCGGTCTCAGGAACACTGATGTGGGCAGGAGGGCACGGGACTAGACAGAGGGAGCAGCTGAGTTGTGATGCAGTTTCAACGGGCTTCGGCCAGCCCCCTGGGGGTCGCATTATCTCAAGTTGGGGCAGGAGGGCATCACATACTGCCAGGTGTAGTTGCCCCTTGTGGGGGGCATGACCTGGGGAGAGACAGCTCCCCCTGGCTGAGGGAAATTCCTGGGGTGGGGCACAGCTGTGAACTGTTGCGCACCCACCCCAGGCAGTTCACCGAAGGGTGGGGTCCGTGGTCCACCCCCAGCACAGCTTGGACCTATGCGCTTTGCACGAGTCTGCCTTGGCAGGGGAACAGCCCCTCTAGAATTGCATTGGTTTCTTTCTCAGGGAGCCTTACAGGAGGAAGTTTAGTGGGCTGAACTGCAGCTGGTGTAGGGGCTACAACTGACACTCACAGTTTCCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTCCGCCACTACGCCCGGCTAATTTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACAGTTTCCTTCTTCTGCGACGCCCTCTATTTCCCCTTAGCCTGGCTTAGCACCTCAGAGGGGCCAGGTGGCTACCTGGTGAGGTGACCCTGGTCTCCATGACCATCTCAACCTGAGGCTGCTGCTTTTGTCCAGTTATCATCACAAGGGGCAGGGGGATACCAAGAGATGCCCAGGGCATCAGCAGGTGCCACATAGATTCTTTGGCCCCAGGGTCAAACAACGCCTTTCCTACTCTTTTTTTTTTTTTTTTTTTTTTAAGTAGAGAGAGGGTCTTGCTATGTTGTCCAGGCTGGTCTCGAACTCTAGGCCTCAGGTAACCCTCCTGCCTCAGCCTCTCATAGTGCTTGGATTATAGGCGTGAGCCACCTGCCTTGGCCTGTCTGCTCTTGATGATCAAGTTCAATCACCCAGCCAGGACGGCCACTCGTTTCCATGCTGCTGGTCTCTTGGCACAAAATGCCCAAACAGACCGTGTGTGGCCGCAGCCTAAAGTGTAATGAAACTGTTGCTTCGTCTTTGGGTGGAAACGTTCCCCATGTGCAAACCAAGGTCTCCAGACCACAGACCCCAGAGCTGCAGGGATGGGGAACACACAGTCCCCAAGTGGTGGCTGGGAATGATCGCTACTGCTACTGCCCCTCCTGCATCCCAGACCCATGTCTTCTATGTGCTGGGCACACAGCACCAGGACTAGGCACAGGGCCAGAGGGTATGAGACAGCTGTGTCAGCAAGGGACCCAAGCTCCCCCATCCAAGACCCTTGCACCCACATCCGCTTTCTAGCTCACAGCTATGGCTGTGTGGGGGTGCCCTGAAGAGCAGAGAAAAATGGCCAAACTTGATTTAGAGATGGGTCGGCTTGCCCTGAGGGTGCAAGCTGGAAGTAAGATCTACTTCACTAAAGCCCCATCCAGGGCTGGCCTGGAAAAACGGCAGTGAAGGAAAATCCTTTGATTTATGTGGGTGGTGCCTCATGGGAGATGCCCCATCCTCACGGGCGTGCTGCCTTTCAGCTGGCACTGTGGCTCCCCGCTCCATTGCTCCATCAGGCTGGCATTTCTGGGTGTTGGAGGATACGGCAGGCCCAGTGGATCTCACAGTCATGCGCCCATTGTGGCACGTCCTCTGCTATAAAGCGGGTCCCTTTGTTTAATGCCATGTTCTCGGTACCCTGTCCCATTCAATCAAATACTCTGTGAGCCTTTGGGCGTTGGGGCTGTGGCTGAGCTTCTGTGGGCAGGAAAGGCAACTTTTATTTAGGACCAGATTCAGCACTTCCCCTTCCAGGATGGAAGGGGTCTGATGTGATCAGCTTGTCACCCAGTAGCTGAGTGGCCTTTAGAGGTGGTACTTTAGAGGCTTAGTGTTGAGGCCAGAGACTGGACGTTCAGGAGCGGAAGGAGCTATGGTGGCTGTGGTGAGTGAGAAGCCGTGTGCTGGGGCCACATGTAGCTTCCATCCCTTCCTCCACGCTGATTCATTCACCCGTTGTGCCTGCAGTGGGGTGATGATGCCTGTGACTAGCCTGTGTCCAGTGGCAAGGCCATTCTGTCTTCTACTGGGGTGTTTAGTGCCTCTCGCATGGTGACACTTCCTGGTACAAATGAACAAATGAAAGGAAGACCTCCATCCTTTATGCCTACTCCCTAGATCCAGCCACAGGTACCTCCTCCAGACCTCCTGGTCCCCAACCTTCTGATCTTTCCCACCCAGGCTCCTGACCAGCCAGCCAAGCCACTTGCCACCACCCATGATTCAGTTCATACTCTCATCTCGGGCTGCCCTGCCTCCCATCACACCGATGCTTACATCACATGCACTGCCTGAAGCCCATGGGGAAGATTTTCCTTCACTGCTCTTTTTCCAGGCCAGTCCTGGATGGGGCTTTAGTGAAGTAGATCCCACTTTCAGCTTGCACCCTCAGGGCATGCCGACCCATCTCTGAATCAAGTTTGGCCATTTTTCTCTGCTCTCCCTTCATCATAAGGGCCCCCCCACACACAGCCATAGCTGCGAGCTGGAAAGGGGATGTGTGGGTACAAGAGTCTTGGATGGGGGAGTTTGGGTCCCTTGCTGACACAGCTTTGTCGTACCCTCTGGCCCTGGGTGTGCCTAGTCCTGGTGTAACACTTCCACCTTACAATGGATTGCTGCTGGCGGAGCTGGTAGAACTCGTGTTGGAGGCAGCTCTGGCTGTGTGGGTCGCCTGATGTCCCGTAGCCCAAGTGTTCCATCTCTAGTAGGGCCTCGCAGTGTGCCAGAAGTTTTTTGCAAGTGATGTGTATTTATTTACTGCAGATGGCCTTGCTCCAGAACCATAGGGTGCTATGTTATGCTTTCCCTACAGGCTTTCCAGAAATTCCATCTGACATCTTTCCCTACCACAGATATCTCTATTCCTATAGGATCTGCCAGGTCATACGGCCCATGTGGCGGGCTGCTTGCCTCACAGCCTGGACCTGCTGCAGGGCCCCTTCCACTCAGGATCCCACCCAAAGCAGCAGCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTATTTTTGAGATGGAGTCTTACCCTGTTGCCCAGGCTGGAGTGCAGTGGCACAGTCTCAGCTCCCTGCAACCTCCGCCTCCTAGGTTCAAACGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCGCCCACCACCACACCCAGCTAATTTTTGTACTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGGCTGGTCTCAAACTACTGACCTCATGATTTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCAGCAGCAGCTTTTAATGTCACCCAGCAGATGAGTTGAACAGATATTCTTGGATGTGGAATATGCTGGCTCCAGAATTACTCTTCGTGGTGGAGGGTATGAGATGCTGTCAATTTCTCTTTCCTCTCAAAGAGATGTCTGGTACGCCCTAGCCCGCGGAACCCTGACATTTCCACTAATGTAAGGGGCTGCCGAATCTTCACAGGGTTGAATCTCTGCTCCTCTGGAAGACAGGTGCTTTACCAAGACCTCTGGCACCAGTGTCTGCTCCTCTGATCTGATAAGTGTGGCGCCATCAGTGCAGAGGACAAAGGTCAAGTGCTTGGAGTGGTCCAGATGCCTTTATAGTGTATTGTAATTGGGAGCGGGAGCGTAAGTGTAGCCCTGGGTCAAGACTGTAAACACATACGGTTGTCCACCCCAGGGGAATGAAATAGTTTCTGGTCCACCTTCTTGACAGGGATAGAAAAGAACATATTTTCCAGATCAGTGGCCACCTAGGATCAACCTGAGGCCATGCTGATCTGCTCTAGGAGAGAGACCACAGTGATCACATCCTGGCAGTGGAGGCCACCACTTGGTGGAGGGTGCAGCACCCATCCAGACTCGGATGGCAGATCCCTGGGGTCTGTCTTGTTATTGTGGGGGCTGAACTATCGAGTTAAATGCGGGATGTGATGGGCTGGCTACATCTGCATCCTTTAGGTCAGCCCCTACCTGCTCTATGCTTCTAAGTGCCATCCTAGTAGCCTGGTAGCATTTCTCCCCACGTTCTTACCAAGGCGCTAACTTCTTTGTCATGAGAGGATGCACCCAGCAGTTCCTGAGGGCTGGTCCTGCCGTTCCATTGGTGTATAGCCCCTTCTCCCAGGACTGCCCTGACTGGGCGAGAATGTGACTTAATCTAAGCTATTGGTCTGGTGGCTGGGAGAGGAGGGCAGGCCAGCTCCTGTGGGAGGCCCGCGTGGCCGTGAAGGCAGAGGTCTCTGTGTCGTCTTCAGGCAGGGGTGGCGCTGGCTTTAACAGGGACAAATGGGACAGGCCCATTTTTGAGGCCCTGAAGGCTTGGGACGTTTGAGATGTGAAGTTTTTCAAGTGTATTGACGCAGATCCCCACACCCCGAGTCTCAAGGTCCCCCTCTTCTGGTTGGTCTCTGTCCTGGGCATAGCAGGCCTAGCAGAGTTGGGAAGAGCACGCTCTCTGCTCCTTGGAGGTGCCTCTGCCTCTCCCGCCTTCCAGCTGCAGGACACGAGGGTGTCTTTCTCTGCGGCTGCGCAGACCCTCACCCTCACCTTTCCATGCCATCCTTCCGTTCTTGGGGTCCTTTACTTCCACAAACCTCTGCAAGTTTTTAACCCCTACCCCTGCCCCAGCCAACTCTCAAACACTTGAGCTATTGCACCAATAGTGCATTTCCTTTCGCTGGCATTCTCTCCCAGTTCCCTAGTGGTGAACCTTTTCACAACCGCTTCACTGTCTTCCGGGGGTCTCTGTGCTCCAGGCATTTCTACGTGGGCCCTCGTTGCCTCTGCCAGCCCGTGACCCTCTCCGACATCCTATTTTAAAATCCTAGGCCTGCCTGCTCCTGACACCAGCTGGTTTTGGTTGGAATCTCTGGAAAAAGCAACTCCTGGAGAGAGGGGCAGCAGGGGTCTGTGGAGGGAGAAGCCGGGCTGCCCCAGGGTCTTGACAGGGGCCTCAGCCCATCCCACAGGGAGCCCTGGAGCGGGGATGAGCCTTCACTGTTGTCTCGAATTGAGGCAGAGCCTGGGTCTTTGTACTCCCACCTGGCCTGGGCAGTGGGGCTCTGGGTTGGAGGGTGGTGGGAGAGGGACACCGTGATTACTTAGAATTTCTGGCACATGGTGAGAAGAAAATGCAGGCCAGGTTTTGTTGGCTTCATTACTTAAATTCTCTGCATACAGCATGCAGAGACGAGGGCCCACCTGGGCGTGCCTGGAAGACTGTGACGCCTTGTTGCCTGTACCCAGGGTGGGCCACTCCCCCCACCACACATCCCCAGCCCCCGCCCTGTTCCCAGGCTCTTTGACTTGGATGCCCCTGGGGCAGGAGCACTGCGTTGGGCTGGGCTAGTCAGTGTCATTCCCTGAGGGGGCTCAACTGCCAGTCACAGCAGGGAACGCACCCTGCAGCTCTGTGGGAAGGGGATTGGTGGGGAAGGGGCTGGACAGAGTAAGGAGGGGCTGGGGACCCACTTCTCTTTCCCTAG
Seq C2 exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCCATCACCTTCGAGTACACGCTGCTGCAGCCGCCACACGAGAGCCGCCCCCAGCCCATCTACTATGGCTTCTCCGAGAGCGCTGAGAGCCAGGGCCTGGACGGGGCCGGGCTGATGGGCTTCGTCCCGCACAACGGCTCCCTCTACGGCCAGGCCTCCTCAGAGCGGCTGGGCCTGGACAACCGGCTGTTCGGCCACCCGGGCCTGGACATGGAGCTGGGCCCCAGCCAGGGCCAGGAGACCAACGAGGTGTGCGAGCAGGCCGGCGGCGGGGCCTGCGAGGGGCCCCCCAGGGGCAAGGGCTTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(14.4=15.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development