GgaINT0126519 @ galGal3
Intron Retention
Gene
ENSGALG00000000977 | SIN1_CHICK
Description
NA
Coordinates
chr17:10440807-10448509:-
Coord C1 exon
chr17:10448442-10448509
Coord A exon
chr17:10441131-10448441
Coord C2 exon
chr17:10440807-10441130
Length
7311 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TGTGTATGTTGTATTTCTAGGTA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GAAGCGCTGCCCGGCCCGCCGGCGGGGGGAGGCGGTGCCTGGCCCGGCTCCGCGTAGCGCCGCAGCCC
Seq A exon
GTAAGTGTGGAGGGGAACGGGACCCTCGGGCGGGCTGCGCGGGGCGTGCCCGGTGCCACCCTCACGGTATCCCTTCGGGCCACGGTCCGCGACTCGTTCCCTGAGGAGCCGCCCGCTGCCGCCCTGTGCCCCGGCCGCCTGTGCGGAGCGGAGGAGGCCCGGTCCGTGTGGGCGGGAGCGGCTCGCGTTCCGCAGCTCCGTTTGCGTGGCTGTGGGGCGAGGCTCACGCCTGACCCCGTTCCTCCCCTGCTGGCGGGGCGCTGTGCTGCGGGTGCTCGGCTCTGCCCGCCCGGAGGTGCGGGCCCGGGGTACGTGCACGGCCGGAATTAAATTCTCTCACTTGTGTTGTTCTGTTTTTTTTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTCAAATTCAAAGTAGATCTGTTCGTGGACGCTTTATTTGGATTAGATTTAGAAAAATGATGTCGCTGTATGTATATAGATTTCTACAGAAATAATTCAAGTGGTGAAGGAAGAACCAGCTTGTTTATTCGGTGTGACTGTTTCACCCAGCTGCAACAAATGGCAACTCCCGACTTCTAGCATAGCTTTTCCTTTGGGTCAACAAAGAAGTGCAAGCAGTTTGGCAGAGTGAGGGATATGTTACTCTGTCTGTATTGCTAATGTTTCCAAACTGCTGGAGGCATTTGAGAAATAGATCAGTGCATACACCGGTGAGAGGCCCTTTACTCTAGCCAAGGGGACAGGAACACAGGGAGCAGCCTGCTTGCTCTAGGGCCGGACTGAAGTTCAGCACCTCCTCAGGGCAGGAATAGGGGCACCTGGGATGTGTAGGGCTCGGGCTGCCCTATGGGTCCTCTCCAGGATGGCAGGCAGCAGTGACCTGATGCATCAGGCTGGAATACAAGAGACAGCGCTGGTCCTGGGACACAGTGTGCTATTGCAGCAGCAGCAGCGCTGCAACCGGTTGTCTTTTGGTGCCAGGTAAATTCATCGTTGTGACACTGCATTGTGTTTGAGATGCACCTTGCAGTGACTTCAATGTCTTATGTTTTGCTAGCATCAGTTCTCTGTCAGAAGGGACCAAATGAGGGTTTTCTGTTGAACAAAACCACTCACAAAGATCCTAGTATGCATTTTAATATTGATTGTGAATGCATTGGGAAGCTTCATTAAACTGGGATACCTAGCTGCTGTCTGTGAGTTCATTTTCTTGTAAAAGACAATGCAGGAGTAATCTCCATCTTGTTTTCTTTCTAAATCAATTATTCGAAAAGCAAAACAAAATTCCTGTCTTTTGAGTGTTTTGGTGGCCATTGAGGGAGAACGACTGGAAGTTTGACAAAAGAAAAGTTGAAAGCCAGAGAAAGCGGATATTCATCTGTTGCTGAACGAATAAGAATGTGTTCAGTTATATTTGTCACGAAGGCTTGATTTCTTGGGGGTGTTAGCATTTTGGTAGTCCGAGGTCTTATTTTTCTAGGGCTGAAATGCCCTGTTTTGTTGAAAAGCGATGTCTGGAAAACTGAAACTGGATCTGAAACTGTAGCAGATACTTGGAAGAGAAATACTGCCTTCAGTTAGAAATGGAATGATACAGTTACATAGCAGGGTAAAAGCTTTGAGAATAGGGTGGTGAATGGGCTCCAGTTAAGGCAGGTGGGTTTTGTGCAATAGGTCCCTGTTGGGTTCCAGCTGCATGAGCCCAACTGCAGACTGACATCAGGGAGCAGCAGGCGTGTCTGCTGCTGAGGCTCTCAGTGGATCTGCAGGCTGCTGTAGGTACAGTGCAGCTCAGGTCTTTGTCCTGGGTCTGGAGCATTATCTGTAGGGCTGCAGACCTCCATGTCCTTTAACAGCTTTGAGTCCAGTTCAGCTTCAGTGCCTTGGAACAGGCTTTACAAAGCAGCTGTGTGAGTGAAGCACAGGCAGCTCAAGTAATTCTGTAACTGAGCACTTTCCATGCTCAGGGAAGCCCATTAAGTGCTGCATCCATTCACAGTAGTCTAAAGTAATAGAAGGTGGCCTTAAAAAGCCTCCTTCTGTCTCTCTCAGTATTATGTAGGCCAAAAAACAGGAAAGCGTTGAAGCTTTCTATTTTAGTCTTTGTTGTTAAAAATTGAAGTTTGTTAAAGTGTTTGAAACAGTTATGGGATTTTTAGGCTATTGAGTACTGTAGTGAAAGGAGCTAGAATGGAAACTGTAATCTAACACTTGGGCAGTCTGAGCCTACGCTTTAGGCCAGGTGCTTGTAAATAGATGTTATATTTGCTCATCATAGGAATATTAAAGATGCACAAATCATCATTTAGGCGAGTGAGAAATCTTGGTTCCATGTAAAGGTGTTGTACATTGCTGAAAGTATTTCTTGTCAGTTCTCTATGCAAGCAGATGTGGTCAGCGTCACTGATACAAGGGCTGCTCATCCTCATTTTTGGAACAGGGTATTCATCAAGAATGAAAATAAAATGGAAATGGCAATGTGTTATTTAAAAGATATTCTGGATTTGTTTGTTGTTTTAAAATAAATAGTCATAAGAGTGAATTCAAGCAACTGTTTGTTCTTGTTGTTGTTATGCTTTTTTTTTCCTGGATGGTAAATTCTCCTGAACACAGGCTCTGAAATTGGGCAGTAGTGATTCCAGTGTGTTGGGCCCTCACAGTATGATGCTGTGCATGTAATGCGTGTATCATTAGTGATGCTTGCTAGCCAGTATGAAGAAATAAGCATAATCATAGACATTAAAAATTAAGCAAAGTGTTTGCACATATTTAGATTAGGCAAAAAAAAAAAAAAACCCAGGCAAGATGCAGCTTTTCTAAACTGTTTCTTTCCAAACCATTCAGTGCAATATCAGAATGAAAAATGACAACACTTTGTCATCTGTTCAAATTGATATTGCACTCTTTGCAGTGACAGCTGAAAAGGCCCACAGGTGCCATATAAAGAGGTGACCATGTTGTCATATTTCATTTAGGCATCCCTCTGCAAAGCCATAATTACCTAATTAGGTTGTTAATTAGGAGATTAGCATTTCACTATATTGATAGAATGCTCTTTGCAGGCGTGATTCTAGTTACGGATTTGTCTGCCCTAATTTATAATCTTTGCATTTTTTTATACTTATTTATTTGTGTAAAATCTTGATGCGAAGTAGCTCAGGTTAGCTGAGAATCAACTTGTTTGCAATTAAATGAAGATTTGACAAGATAAGGAAACAAACAGGTAAGTGTACATTCTTTCCATATGAACTCCAACGTTCTCTCTCTCCTTCCCTAAAGCTCTGTAACGAAAACATTGGATTCAGCGTAACTTGCATCCTGACTGGTTTGACAGCAAAAATATAGGCAAGTTCCAAGCAGTTCATGCATATAGAAATAAATATCCAATGTCAGATTGATTTTCAGGTTGGAAAACTAACAATGAATTTTGTCAGAACTTGTGTGTAATGTATTGTTTTCTCATAACTTTCAAATTCCCATTTCACTTGTGAAAGAGCACCTCTTTAAATGACTTCAAATGATTATTTCCTTTTTAATGATAGGACGCAAAGCATGAATGACAGCTTCTCTAAGCAAGCATGCATTCTTAAATGCACTTGAGCTTTTATTGAAACACAGACTTGAATTTTCATGTATTACATTTCACTTTCCTTTATCCTCCATACACAGGAGTCTGGCATTCAAGGGTTTTGATTATTTGTACGGCTGCAAATGTAGATAGCCAGGACCATTTATGTAGCAATTGCAGACAGAAGTTAACTGTGAAATTATTTCATATAACCTGAATCATAAATTTTGAAGTATATTCACACTGTCCTATTCCAGCTTGTCACATGTAGGGAAAAATCAATTTTATTCTAATCTACCCTTTTTTTCATTAGTTTCTAAGATTACTTTAAAGACCTGCAGTCAGAGAGGTGTGCAGTTCGGTGAACGTGGCAGCCCATGAGTGTAACGTTGTGAGATTCCTCCAGCGGCGCTCGGAGCGCGTGAGTGGTTGGTTCGGACCCACACCGTACCCTCCACAAACTGCGTTTTGGTTTGGAACATTTTTGTTTGCAATGAGTAGGGTTTAACTGGCTATTACTTCCTCAAGGCAGACAGTCAGTGTAAGCATCTTTTCCATGAGTTGTGGGCCTGTGGAATTAGAAATAGGAAATATCCTTCTTCTGCTTCTCACGCTTACTCTTTACTTTTTTCAGTTTATTAATACACAATTCCTTGCAGGAATTGGCAGGAGAAAGTTGTGCAGAACTTCCAGCTGCTTTCAGCCATTTGATCTGAAAGAGTTACTGTTGAGTTGGTAAAATTTCAAAGCTGTAGCTCTTTTCTGAAGCAGAAGAGTTTCTGCTGCTGACAGCTTTCTCCAATTTTTATCACTTATCATAGATTATTTAGAGGTCTAAGAGCAAATTTGCTCACATGTGATACCTGGAATTATGAAAGGCATAAATATAGAACTTTTCTGTGAGGAAGGTATTTCCTGTGCTTTGGTCAGTGGCTGTGTATCACAGAGAGGTGCCGTTAGCTTGCAGCTTTAGGAGCAATAGCCGTGGGGATGAAGTTGGCAGTAAGTAGATCGTAGTTGGCTGAGCTATAACTATGCATGTTTTCTTCTCTAATCTCAGTTGGTAACCAGTTTGTGTTCTTGTGATACATCAGGCATGTGTGCTGTGCTAAGACTGCATTGTGTGGGCCAACATGTGTGTGGTAAGGGGAACAACGTGTCAAAGTACAGCATGGAGCTGTTGCTCGTAGCGCTCAGGCAGGAGCCGGGTGTTGGGCCAGTGCTCCTCAGTGCAGGAAGGGGCTCTGGGCTGTAGCTGCAGTCACTGTGCACGGTCCGTACTGCGCTCGCAGTGTGTGAGCAGCCTGCAGCTCGGTGAGGGCAGCAGTGTAGCGGCCAGGAGCCAGTTGGGGGGGGGGGGGCTGGGCAGCCCCATGCAGCCTCCTCTGCTCAGAAGAGGGAGGAGTTCCCCCTGACCTGGCTTTGTGTGTTGGAAACCAATGGTGACGTTCAATACAAGGTAACGATGCTTTCCCCAAAGTCAAGAAACCTGCATTTAGCAGTTATTTCATGCTCACAGTCAGACATTTGCTATGTGGGGAGATATTTGGGGATTTGGGTGGGGGAAGAGGAAGGTGAGTGTATCTGACTCTTATTCCAGAAAATACAGTGTGTCAGAAAAGCAGAAGGTCTCCCACAAGGTGATACGTTGTGGCAGTGAAGTTTCCTCTCCAAATTCGGGTTCATGCACCTGGGAGTGACCACAGGGCCTCTGTGTGGGACCTCATGTCCCCTCCTGGAAGCAGGGTAGCTGTTTAAATGTCGTGCCTTACTTATTTACTGAATTATGAATGAGGTTGATCTGCATAACAGCTGTGCTTTGCTTGCTGTGAAAGTCTATAGATGTTGTAAATACAGCAGTAGGTTACTAGAAGAGGAACACGTGGTAAAAGTAGACTGCAGTCCAGCTGCCTGGCTGCTCCATGTGCCCTCCGAGGGTGCCTGGCAGTGCAGCTCTGCCCAAGGCCTGGCTGCACAGTGGCAGTCTGTGCTGCTGCCGTGTGCTGAGCAGGAGCACCCTGCAGGCAGGTTGGATAACGTGTAGAAAGTGCAACAGATGCATTACAAAGATCGAGAATGAAATGAGAGGCCGCTCTGGTTCCATCCCCCTGTGTGATGAATCACAGAAGGTGTTTGGTGATCGGTTGTATCTCATCATCCCACCAAACTATGTCGTACAGAAATGCTGTTAAGGCTGCGTAGGTTTCACATTGCTCCTTTCATTTTTAGTGTTTGCACAGAGTATGCTTGACAGCTGCCTGCGAAGTATTTTATTTAATAGCAGTGTAGTATTTAGATACTGCGAGTGTTAAAAATAACACTGGCTTTTTGTTGGTGATTGAAGAATGTGTAAATTGCTGGTGCGTGGAAAGTCCCTGACTTCTTTTCAATTCAGCTCATGCCCATGGGTGAGGTAACGGGCTGGGGGTGTGAGGAATGCAGCGAGGCGGTGTGCTGGCAACTCGTGGGAGCTCCAAAAATTGATCTGGTATCTAATGTTGATGAAATTGACTGCATGGAGATGTGAAGGTATTCGTGTGAAAGCCTGCAAAGTTGAACTTTGCTTCTTTGAATTCTTCTGTTGTCTTCGTTTCTCTGACCAGATCTGCACCACCTAACTGTACTTTGCTTCTCTCCAAAGGAGGAACCAGTTAGAGCTGTGTAGGTAGCAAATGCTGAAGTATGGTAGAAAAATCTAAGCTGAATTTTAGGTGCTGTTTTTTGGGGTTTTTTTTTTTTTTTTTGATAACTGTTTAAATTAACTGGAATTTCTATGAATACTTTATTATTGAAAAATAATTTTTACGTATCCTTTTGAAAATTCTGAAGAGGAAGGAAGGAAATGTGTTTGTATTCGAGTTTGGACTTTGAAACGGAATTTCTGGTGATTCTTTGCTGTTGCTGTTTATGGGAGAAGTGATTGTGTGTTTAAAATGGTAAGGAGGCTTGGCTAATTGAGCACGCTGACTGCTAATAGCGTGAAGTCGGGGTGCAGAGTATAAAGGTAAAAATCTCGCATCTGCTGTTACATGTTGTTAACTCCCTTAGCAGACATTAAATCATTTCAAGTACAATAATAGTGTGGGAGGTACATTAACTAACCATTAACAATCTTATAAATACACAATTAACATGCCAACATTTATATGACACATTGATGGGGCAGCAGTAATTTTTGATTGGGAGTTTGTGGACCCTTTAGAAGCCTGAGGCAGTTGCTTATTTAAGCAAGTTCTTACTGCTCACAGGTAAGCGTGGCCCTTTTCTAATAAGCAGTGTGTTAGGAATTATATTTAAACTACGTTCTCGGTGCACTTTTAGAACGTCTGCGTGCTGTACTCAGCTGTGTCTGCAACTTTGCGGTCACATCGCCCCGGTCACACGGCCAGAAGGCCTTTGGGACGTGCGGTACAGCAAGGAGACGGTCTGCTGAAGGTGGGATTTATTTGCCTCGGGGCCTCTTGCTTTGAGGGCAGCGAGGAATCCTTCAGGGAGAGCAGGCCTACTTTTGTAATGGAAATAGTCAGCAAATGAAGAACAAAACTCGGGCTGGGGTGACCCACCATGAAACCACCGTTCTTCAAGTAGATCTCAGCAAACCATGTAACTTCAGGAAATTGGAACAGAATTGAAATAATTCACTCTACAAAACTGAATCAGATTTTGTGCATCAAAATATGGACCTTCTTGGTCAGTATTTGGGTGGTTTTTTGTTTGTTTTCTAAATGCTGTGTATGTTGTATTTCTAG
Seq C2 exon
GTACAGTGTCCATGCAACAAGATGGAGAGAAGATAGTACAGTGAAGTGGTGGTCTTGTGGGCAGAATGGCTTTCCTGGACAACCCAACAATTATACTTGCCCACATTCGGCAGTCACACGTGACCAGTGATGACACAGGGATGTGTGAAATGGTCCTAATAGATCATGATGTCGACCTAGAGAAGTTTAATCCCTCATCAACATACGGAGACAGTGCTTCAGAAACACAGGGAAGCAATGGTGAGACTCAGGGCTATGTATATTCCCAATCAGTCGACATTACCTCAAGCTGGGACTTTGGAATTAGAAGACGATCCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977:ENSGALT00000001443:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.287
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054227=SIN1=PU(14.9=79.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]