GgaINT0127236 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1725343-1729702:-
Coord C1 exon
chr18:1729616-1729702
Coord A exon
chr18:1725407-1729615
Coord C2 exon
chr18:1725343-1725406
Length
4209 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
GAAGTATCTTCTCTTTACAGGGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
CTGGAGCGTCAGCTTCTTCAGGCAAATCCCATTCTGGAATCCTTCGGGAACGCGAAGACGGTGAAGAACGACAACTCCTCTCGCTTC
Seq A exon
GTGAGTTGTTCTCTTTCCTATTGGGAGTCTGTAAATCCACGTGGCTGCTTATGGAGAAACTCCTTTTTAGAAGTTAGCTGGTGTCAGAAGGTTTCTTTATTCTTGGTGACCTCAGACTCTGTTATAATGCCTTCTGAACTGTGCTGGAGTCATTGAGGATGCATCTTCATTGGCTTTTGCCAAAACTTGGTTTAATTTCACCCTGTTTATAATGTCTGCTATTCTGGAACTGCCAACGGTATTCGTAGTGTAACAAATACATCTGTGCCATAGAGCTGAACTATGGCTTGCATGCACAAATCACTGCTGAATGATGGTAAAGTATGAAGAGATGCAGCACCTGGGATTTGGCTGAGCATGTTGCCTTCCTGTCAATAGCTGTGGATTGGTTTAGGGAGAAGATCCTCAAGAAAAAAAAAAAAGGCACCAAGCTTATACTCAAAAACTGCTCTAAATTTCAATGCCCTTGTGACTGCAGTACTGAAGGGAAGTCAGGAAGACAGCATGACTTACATTTGAGAGCAGGGCACTCTTGTAGTTGGTTGAGTTTGGATGGGCCTTCTGCTTCACTGGTAGGTGACTTCTTCTCATGTGTTTCTTTGTTTTGAAGCCATTGGTGGAATTTGGGGTGAAAAAGCTGTCTCCTGTTTTCAGAGGAAAGTCGTTTATAGTGCAACTTTAAAACTGTGTGGGAGGCATTAAATCTTTTCTCTTGCAAGAACTGAACTAAAATTTACAGAACAAATGAAAGATTTTTGGCTGCCTTGATCTTTCAGCGACTGCCTGGATTTATTTGTATAAAAGCAGCCCAAGCGATAAGGGCTCTGGAGAGTTGCATGACTGAATCCTTTTGTGTTAGCAGTCAAAAAGGGAGAGCAGAGTACTACAGAAATTTAACTTCTTGATAACTTCATAGCCACGTTGTTTGCAGTCCTGGCTGATGCTCATATATGTTGTGATAGGATTTATAACATCAACAGGTTTCACTGCGCAGTAATTCTTCGTTCCGTTGCTTGAATCCATCAAACACTGCACTAATTTAACAAAGATACTTTTTTTTTTTTTCATGGAAGATGTCAGCATCTGCTCTGTATTACGTTGAAGTCTGCACTGCCATCGAGAACATAATCGCTCAGATGGCTCCAGCTCTCTTTTTATAAAGGAACGAGTTTAATGCACTCCAGATGGTGTCGTCTTTATGTTAAAAGAAGAAAAAAAAACACACACACAAAAATCTTTAGCAACAGGCATTTCAAAATCCGACTTGAAAAATGCGTCCTCCCACTTTGTGGGAACTGCTGTTGTTCAGCACACACGGGCCTGACAGCCTAAGTCAGGCTGTTCCTGATAATCCAGATAATACTGAAATGAGGCTCGTGTCAAGGCATTTTCTTTCTCCTTCTCCTTGACAAAATGCAGTGTTCTTCTATATTTCAGGAAATAAATTCTGGAGGTTGCAGTGGATGGGAAAGTGGTCTTGTTGGGTTCATACTCCAGCACTGAGTGCTGCTTTCCCCCTTATGTGGTTTCCAAGAAGCTGTGTACTTTATTGCTATAACGACAGTGTAAACAGAATTTGGTTGTTAAGAGACAGTAGTGGTGGTCATCCTACTGATGAGTTAAAGATTTCATAGCAAGATTTGCCAGAGCTACAGGGCATATTGACATCTCACTTCACTGGAGATAAGCTAGATAAGTGGCCCATCTAGTACAGACTTAAATGGAAGCTCAGTGTTGAGGCTGAGAGTGTGTGGGTCTCCTCCGCTGTGCTGTCTGCCTGCATTGCCTCCCAGTTAGTTTCATTCATGGAACTGGGGACTTGGCAGCAGAAGTTAAGTAACCTCTAAGTGTGAAATGGGGTAAAGCAGTTGCTAATTATACCAGAAAAAGCCACTGGCTAGACGTGATGTAGTGCTTCGTGTTTGCTTTCACATGAAACATGGCAAATTCAAGCCGTGTCCTTCTAAGAAGGATTTGTCATCCATTACGTGTGTGAAGCTGTCAGCTGCCACTCCTGACACACTCACTGGTGCTGACAGATGTTCCATCTAGCCAACAGGCTGAATTTCAGCAAAATGCCAATTCCCCCACTGTAACAGTTAAAAACATGGCCTTCTGGACTTGTTGCTGCACAAAGAGTGAAGGGCTTTACTTAAAGTTGAGCCTACAGTATTCTCAGAAATCTGAATTCTAGTGCTGGTCCATGACAGGATGCTTGAAAACGTGCCCCTTTCTTTCCAGCAGCACTGAATTCCCAACCACACTGTGGGTTAAGTTAAGCAGTAGGGGTAAGCACTGAAGCTTATTCACAGTATTCCAGCAGTTCTAAGAGAACTTTGAGAACTCTGCATTAAAGGCTGTAGGAAGTAAGGCTTCAGCTGGTTTTACCTCTCTTTTCAATCCCTGATGTGGCTGGGTGAGAAGCATGCTCAGCCTTGTATGCAAGTCTCTGACATGACTGGGCTTAATCAGGAAAGTCAAGAAGCTGAGGGTGTTCTGGTAAGTTGTAATTGTTTGAATGACATTGGTAATGTGTGCAGGTGTTGTAATAGTGCAGCATGGCAATACATTCCAAGAACATCAACGACAGTAAGCCGTTGTTGGAATACATCTGTTCTCCAAGGTTGTAGAGTAGAATTTTTAATGTGGAAATACGTTCCCTGAGCTAAATAGATCTGCCACACAGGAATTCTTTAACATACCAGTAGCAATGATCTGTCAGACCCGAGGTTCATGAAGATTTGGATACTGCATATCAGCAAACTTTCAGAAATCTGTCTCTTTTCACAAGAGATTAGTAGGTGACTTTGTGCAGGTATCATTTAAAGATGCACTTAGATGGCTGTTATTAAATTGCCATGATGCTCCCTGTGCTCCAGAGCCTGTTTCTATGTAGATAAGACTGCGGACATTGGATGTGATGAAAATAGAGATCCTGGTGTGGTTGCTGAGTATTCCCACTGGTTTCTTCACACGTGTGCAGCCAAGGCAATACTTAAAGTTTGTGCTTTTGAAGCTTTTAAGTATGGCAACAGTACTTTTAGAAGTGGTCCAGCTCCAATCCTGAGCCAGTGGGGAGTGTTTGTGGCCAAGTGACAGACCAGCCTGGGGTACTGATGTGGCTTCAAACTGGTTTAATTTGTTTGAACTTTGATACCTGGTATAATGCACTTGCTCACAGCCACCTTCTTCCCAAGATCCACTGTGTGTGTGGGAAGCATGATCTGTATCACAGAATCATTAAGGATGAAGAAAGATCTCTAAGATCATTACATCCAACTGTCAGCTCATCGCCATCATTCCCAGTAAGCCCCATCCCTCAGTGTCATCTGTACATGGTTCCTGAGCACATCCAGGGGTGGTGGCTGCACCACCTCCCTGTGCCAGTGCCTGCCCACTCTTTCAGAAAAAAAGTTTACTAATATCCAACCTGAACCTCTCCTGGCACAAACTGAGGCCATGCCCTCCCATCCTATCACTCTTACCTGAGAGAAGAGGGCTCCTGCTGCACCATAACCTCCTGTCATGGAGATGTAAGGGAGCAATAAGGTCACAGCCTTTCCCTCACCCACCAGGCGGGTCGCCTGGTCACAGAAGGAGATCAGGTTGGTCAGACAGGACCTGCCTTTCATGAACCCATGTTGGCTGGGCCTGATCCCCTGATCATCCTGCACGTGCTGTGTGATTGCACTTGAGGTCGTCTGGCCCTTTGTGGAGGAAAGGAGATGTACAGTGAAGAAAGGAGTTAGTTGTCTCTGTCCTTTACAACTGAGAGGGAAGAGAGAGCATGGAGGGAGATAGCAGACACTCTAGTTCTGGAATGAGAAGAGTTGTGATGGTCAGGGTGGGTGGATAAAGCCTACGTGGGTGCCTGAAGATGCTCTTGTTCTGTGGGGATGGGTACGTTTAGTATAGCAACACTGAGATTTTATCACTTAAGGAGTTTTGTTAATGGGAGAACTTGGGCTTCTCTTTTAGAAATCTTACATAAGTCTGTCTTAGGACATATCTAAAATCTTAGTGCTTCAACCTTCAGAAAATGCTTGTGTGCAGAGTAATGTTCCACTCAAGTGATGAGTGCACTGTGTGGAAAAGATTTCATTTTGGCTTGTGTGAAGTGCCTGTTACGCAGTGTGCAAGTGGCATTGTTTTCGTATAGCTGTCATAATCCCAAAGTAAGTACTTAACAGAAGTATCTTCTCTTTACAG
Seq C2 exon
GGCAAGTTCATTAGGATTAACTTTGATGTTACTGGATATATTGTTGGGGCCAACATTGAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]