GgaINT0127236 @ galGal4
Intron Retention
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1738316-1742681:-
Coord C1 exon
chr18:1742589-1742681
Coord A exon
chr18:1738380-1742588
Coord C2 exon
chr18:1738316-1738379
Length
4209 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
GAAGTATCTTCTCTTTACAGGGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGGGAGCTGGAGCGTCAGCTTCTTCAGGCAAATCCCATTCTGGAATCCTTCGGGAACGCGAAGACGGTGAAGAACGACAACTCCTCTCGCTTC
Seq A exon
GTGAGTTGTTCTCTTTCCTATTGGGAGTCTGTAAATCCACGTGGCTGCTTATGGAGAAACTCCTTTTTAGAAGTTAGCTGGTGTCAGAAGGTTTCTTTATTCTTGGTGACCTCAGACTCTGTTATAATGCCTTCTGAACTGTGCTGGAGTCATTGAGGATGCATCTTCATTGGCTTTTGCCAAAACTTGGTTTAATTTCACCCTGTTTATAATGTCTGCTATTCTGGAACTGCCAACGGTATTCGTAGTGTAACAAATACATCTGTGCCATAGAGCTGAACTATGGCTTGCATGCACAAATCACTGCTGAATGATGGTAAAGTATGAAGAGATGCAGCACCTGGGATTTGGCTGAGCATGTTGCCTTCCTGTCAATAGCTGTGGATTGGTTTAGGGAGAAGATCCTCAAGAAAAAAAAAAAAGGCACCAAGCTTATACTCAAAAACTGCTCTAAATTTCAATGCCCTTGTGACTGCAGTACTGAAGGGAAGTCAGGAAGACAGCATGACTTACATTTGAGAGCAGGGCACTCTTGTAGTTGGTTGAGTTTGGATGGGCCTTCTGCTTCACTGGTAGGTGACTTCTTCTCATGTGTTTCTTTGTTTTGAAGCCATTGGTGGAATTTGGGGTGAAAAAGCTGTCTCCTGTTTTCAGAGGAAAGTCGTTTATAGTGCAACTTTAAAACTGTGTGGGAGGCATTAAATCTTTTCTCTTGCAAGAACTGAACTAAAATTTACAGAACAAATGAAAGATTTTTGGCTGCCTTGATCTTTCAGCGACTGCCTGGATTTATTTGTATAAAAGCAGCCCAAGCGATAAGGGCTCTGGAGAGTTGCATGACTGAATCCTTTTGTGTTAGCAGTCAAAAAGGGAGAGCAGAGTACTACAGAAATTTAACTTCTTGATAACTTCATAGCCACGTTGTTTGCAGTCCTGGCTGATGCTCATATATGTTGTGATAGGATTTATAACATCAACAGGTTTCACTGCGCAGTAATTCTTCGTTCCGTTGCTTGAATCCATCAAACACTGCACTAATTTAACAAAGATACTTTTTTTTTTTTTCATGGAAGATGTCAGCATCTGCTCTGTATTACGTTGAAGTCTGCACTGCCATCGAGAACATAATCGCTCAGATGGCTCCAGCTCTCTTTTTATAAAGGAACGAGTTTAATGCACTCCAGATGGTGTCGTCTTTATGTTAAAAGAAGAAAAAAAAACACACACACAAAAATCTTTAGCAACAGGCATTTCAAAATCCGACTTGAAAAATGCGTCCTCCCACTTTGTGGGAACTGCTGTTGTTCAGCACACACGGGCCTGACAGCCTAAGTCAGGCTGTTCCTGATAATCCAGATAATACTGAAATGAGGCTCGTGTCAAGGCATTTTCTTTCTCCTTCTCCTTGACAAAATGCAGTGTTCTTCTATATTTCAGGAAATAAATTCTGGAGGTTGCAGTGGATGGGAAAGTGGTCTTGTTGGGTTCATACTCCAGCACTGAGTGCTGCTTTCCCCCTTATGTGGTTTCCAAGAAGCTGTGTACTTTATTGCTATAACGACAGTGTAAACAGAATTTGGTTGTTAAGAGACAGTAGTGGTGGTCATCCTACTGATGAGTTAAAGATTTCATAGCAAGATTTGCCAGAGCTACAGGGCATATTGACATCTCACTTCACTGGAGATAAGCTAGATAAGTGGCCCATCTAGTACAGACTTAAATGGAAGCTCAGTGTTGAGGCTGAGAGTGTGTGGGTCTCCTCCGCTGTGCTGTCTGCCTGCATTGCCTCCCAGTTAGTTTCATTCATGGAACTGGGGACTTGGCAGCAGAAGTTAAGTAACCTCTAAGTGTGAAATGGGGTAAAGCAGTTGCTAATTATACCAGAAAAAGCCACTGGCTAGACGTGATGTAGTGCTTCGTGTTTGCTTTCACATGAAACATGGCAAATTCAAGCCGTGTCCTTCTAAGAAGGATTTGTCATCCATTACGTGTGTGAAGCTGTCAGCTGCCACTCCTGACACACTCACTGGTGCTGACAGATGTTCCATCTAGCCAACAGGCTGAATTTCAGCAAAATGCCAATTCCCCCACTGTAACAGTTAAAAACATGGCCTTCTGGACTTGTTGCTGCACAAAGAGTGAAGGGCTTTACTTAAAGTTGAGCCTACAGTATTCTCAGAAATCTGAATTCTAGTGCTGGTCCATGACAGGATGCTTGAAAACGTGCCCCTTTCTTTCCAGCAGCACTGAATTCCCAACCACACTGTGGGTTAAGTTAAGCAGTAGGGGTAAGCACTGAAGCTTATTCACAGTATTCCAGCAGTTCTAAGAGAACTTTGAGAACTCTGCATTAAAGGCTGTAGGAAGTAAGGCTTCAGCTGGTTTTACCTCTCTTTTCAATCCCTGATGTGGCTGGGTGAGAAGCATGCTCAGCCTTGTATGCAAGTCTCTGACATGACTGGGCTTAATCAGGAAAGTCAAGAAGCTGAGGGTGTTCTGGTAAGTTGTAATTGTTTGAATGACATTGGTAATGTGTGCAGGTGTTGTAATAGTGCAGCATGGCAATACATTCCAAGAACATCAACGACAGTAAGCCGTTGTTGGAATACATCTGTTCTCCAAGGTTGTAGAGTAGAATTTTTAATGTGGAAATACGTTCCCTGAGCTAAATAGATCTGCCACACAGGAATTCTTTAACATACCAGTAGCAATGATCTGTCAGACCCGAGGTTCATGAAGATTTGGATACTGCATATCAGCAAACTTTCAGAAATCTGTCTCTTTTCACAAGAGATTAGTAGGTGACTTTGTGCAGGTATCATTTAAAGATGCACTTAGATGGCTGTTATTAAATTGCCATGATGCTCCCTGTGCTCCAGAGCCTGTTTCTATGTAGATAAGACTGCGGACATTGGATGTGATGAAAATAGAGATCCTGGTGTGGTTGCTGAGTATTCCCACTGGTTTCTTCACACGTGTGCAGCCAAGGCAATACTTAAAGTTTGTGCTTTTGAAGCTTTTAAGTATGGCAACAGTACTTTTAGAAGTGGTCCAGCTCCAATCCTGAGCCAGTGGGGAGTGTTTGTGGCCAAGTGACAGACCAGCCTGGGGTACTGATGTGGCTTCAAACTGGTTTAATTTGTTTGAACTTTGATACCTGGTATAATGCACTTGCTCACAGCCACCTTCTTCCCAAGATCCACTGTGTGTGTGGGAAGCATGATCTGTATCACAGAATCATTAAGGATGAAGAAAGATCTCTAAGATCATTACATCCAACTGTCAGCTCATCGCCATCATTCCCAGTAAGCCCCATCCCTCAGTGTCATCTGTACATGGTTCCTGAGCACATCCAGGGGTGGTGGCTGCACCACCTCCCTGTGCCAGTGCCTGCCCACTCTTTCAGAAAAAAAGTTTACTAATATCCAACCTGAACCTCTCCTGGCACAAACTGAGGCCATGCCCTCCCATCCTATCACTCTTACCTGAGAGAAGAGGGCTCCTGCTGCACCATAACCTCCTGTCATGGAGATGTAAGGGAGCAATAAGGTCACAGCCTTTCCCTCACCCACCAGGCGGGTCGCCTGGTCACAGAAGGAGATCAGGTTGGTCAGACAGGACCTGCCTTTCATGAACCCATGTTGGCTGGGCCTGATCCCCTGATCATCCTGCACGTGCTGTGTGATTGCACTTGAGGTCGTCTGGCCCTTTGTGGAGGAAAGGAGATGTACAGTGAAGAAAGGAGTTAGTTGTCTCTGTCCTTTACAACTGAGAGGGAAGAGAGAGCATGGAGGGAGATAGCAGACACTCTAGTTCTGGAATGAGAAGAGTTGTGATGGTCAGGGTGGGTGGATAAAGCCTACGTGGGTGCCTGAAGATGCTCTTGTTCTGTGGGGATGGGTACGTTTAGTATAGCAACACTGAGATTTTATCACTTAAGGAGTTTTGTTAATGGGAGAACTTGGGCTTCTCTTTTAGAAATCTTACATAAGTCTGTCTTAGGACATATCTAAAATCTTAGTGCTTCAACCTTCAGAAAATGCTTGTGTGCAGAGTAATGTTCCACTCAAGTGATGAGTGCACTGTGTGGAAAAGATTTCATTTTGGCTTGTGTGAAGTGCCTGTTACGCAGTGTGCAAGTGGCATTGTTTTCGTATAGCTGTCATAATCCCAAAGTAAGTACTTAACAGAAGTATCTTCTCTTTACAG
Seq C2 exon
GGCAAGTTCATTAGGATTAACTTTGATGTTACTGGATATATTGTTGGGGCCAACATTGAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]