GgaINT0127263 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1696225-1697126:-
Coord C1 exon
chr18:1696914-1697126
Coord A exon
chr18:1696438-1696913
Coord C2 exon
chr18:1696225-1696437
Length
476 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GATAAGTGTTTGTGGTTTAGGTC
3' ss Score
6.25
Exon sequences
Seq C1 exon
ATGCTGGCAGAAGAGAAGAACATTTCTGCTAGATATGCAGAGGAGAGAGATCGTGCTGAAGCAGAGGCAAGGGAGAAGGAAACGAAAGCACTGTCTCTGGCTCGGGCTCTGGAAGAAGCCCTGGAAGCAAAGGAAGAATTTGAGAGACAGAACAAACAATTGCGTGCAGATATGGAGGACTTAATGAGTTCTAAAGATGATGTGGGCAAAAAT
Seq A exon
GTAAGTACTTTTCCACCTTTTATTTTATTACACTATATGGGGGATAGCACAGTAAAATTCCCTCACTGGAGAAGTATGTTTGACACAAAAGAAAGAATGATGCAACACAAACTACTCGAGGGATGAATGCTCAGAATCTGGAGGCCAGGGGGTAATATTTCAGGCTTAATTCACATCTTCCAAAGAGACCATGGAGGGCAGAAGTTGCTGGCTAAATGGCGAGTGGCACCTGCTCTAGATTTAAAAGCTTGTCTCAATTCTGTTCTCTTTGTCACATTGACTGCACAGCTCCTCTTTTAATAATCTACACAGCTTTTTGTTGTAGTGCAGTTAGAAAAGCTTCTCTGCCTGTTCTGATTCAGGCTTGAGCATCATCACAAAACATAGTGTACACTGTCCATGCCTTACTTCACTGTTAATAAGCACTCTTGTTTAGATAGCTGAGGGAGATGGTCTGATAAGTGTTTGTGGTTTAG
Seq C2 exon
GTCCATGAGCTGGAGAAATCCAAGCGAACTTTAGAGCAACAGGTTGAAGAGATGAGAACTCAACTTGAGGAACTGGAAGATGAACTACAGGCCACAGAAGATGCTAAGCTTCGTTTGGAGGTGAACATGCAAGCTATGAAAGCCCAGTTTGAGAGAGATCTGCAAGCCAGAGATGAGCAGAATGAAGAGAAAAAGAGGATGCTGGTCAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=0.887
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(37.2=59.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.1=97.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGAGAGAGATCGTGCT
R:
CTGCTCATCTCTGGCTTGCAG
Band lengths:
357-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]