MmuINT0103238 @ mm10
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68802840-68804839:+
Coord C1 exon
chr11:68802840-68803052
Coord A exon
chr11:68803053-68804626
Coord C2 exon
chr11:68804627-68804839
Length
1574 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CTGACGCTTCCTTGCCTTAGGTC
3' ss Score
9.62
Exon sequences
Seq C1 exon
CTGTTGGCAGAAGAAAAGGGCATCTCTGCTCGCTATGCAGAAGAGCGGGACCGGGCTGAAGCTGAGGCCAGAGAGAAAGAAACCAAAGCGCTCTCCCTGGCGCGGGCCCTTGAGGAGGCCTTGGAGGCGAAGGAGGAATTCGAGAGGCAGAACAAGCAGCTTCGAGCAGACATGGAAGACCTGATGAGCTCTAAAGACGATGTGGGGAAGAAC
Seq A exon
GTAAGTCACCTGTAGTTGCAAGGGACAGAAAGGGCCTGGGACACAGGCCCAGAGCAGAGCCAACTCGAGCCCTGTCCTGGAGGCAGATAGGGGCCAATCTGCTCTCATTCACCTGAGCCAAGATACATGTGGAAATCTGCAGGTATGTCCATGTGCCGTACACATGCCCAATGCCCTTGAGAGCAGAAGAGGGCATTGGATCCCTTGGAACTAGACTTACAGGTGTTTGTGAGCTGCCATGTGGGCTGCAAATTGAAACCAGGTCCTCCACAAGGGCACTCAGTGTTCTCTACCGCTGAGACAATCTCCCCAGACCCCATTTGTGGAATTCTTGCAGCAACCCTAGCAGGTAGCCAGATGTTGAACCTTACCCTGGCCCTTCCTGCCCCAGTTCATCCTGTCAGGCACCTCTCAACATGGGCATCTACAATATCAGTGGTTGCAAACCTAGATATTCCAAGATCCCCTGGAAAAAAGAGGTTTGTGGGAACTGAAGCACATTTCTTCCACTCCCCACCCAGCCTTCCCTGTGAGACCTGAGTGCTGGCCTTCAGGGTATGGGTAGTTGTCAGACTTGCAGTTTAGAGATTTCTGTGTGCTCTCACAGGCATGCCTTCTCCAGAGTCCCCATGCTAGTTCCTCACCCTGCACCCTCCCTTAGTATCTGACCAGCAGAGAGCTGCAGAGTAAATCCAGACCTGCAAATCAAAGATGACGTTCCCCTGGGCTCTTCTCCTAGCTTGCATTATTTTGGGGTTTTGAGACAGAGCTTCTCTGTGTAATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGCCAGCGCTAGCCTTGAACTCATAGAGCCCACCAGCCTCTGCATCACCGTGCCCTGCTTCTCCTGTTGTTACCCCATGCACTTTGTAGCCAAGACCTGTTTTGTTGGTTTTGAGAAGTGTGGAAACAACCATAAAGAGGTGTGGTCTGCATGGATCCAAGCCATCTGACCATATCATAGGTGATGGAAGACCATCCTCATCCTGCCGGGCCTTCTGCGTACAGCTCCATGGCCAAGAAGAGCATAGCCAGGATAGATCCAACCATGTAAAAGTGAAGAGAAGACTGTAGTGGTTCTATAGTCATTTTCTCTAGTCATCAACATTCTCACACTCATGGTGACTGCTGAGTTACCAAACACTACTTAGCAAATGGACCTTCCTAAGTTCTGTGGCTTGCCCCTGCCAAGCTAACAGCACATAGGTCTGCTTCAGGAGGTCAGGCGGTTAGTTGGGATAGGAGGTAGAGGACCTCAGTACACTGCCAGTCTCAGAAGGCTCATCTTGGTGGAGACTGTGTTCAGAGAGAGGTCAGACCTCATGGCCAGGCCCTGCTTTTCAGACTGCCTCTGTGGCAGGCTGCTCGAGAGCCTTCCCATTGTGAGTGATCTCTTCTGAGGCTCACACAGCAGGCGCCGTGACTGTGCTTTAGCTTCAGAGCTCTGTCACGCGAGTCGGGTGATTAAAACACGTGTGACCACAGAACTGCGAGATTAGGTCACATCTCTGCTCACCAGCCCTGACGCTTCCTTGCCTTAG
Seq C2 exon
GTCCACGAGCTTGAGAAATCCAAGCGAGCCTTGGAGCAGCAGGTGGAGGAGATGCGGACCCAGCTGGAGGAGCTGGAGGACGAGCTGCAGGCCACTGAGGATGCCAAGCTCCGCCTGGAAGTCAACATGCAGGCCATGAAGGCCCAGTTTGAGAGGGACCTGCAAACCCGAGATGAGCAGAATGAAGAAAAGAAGCGGCTGCTGCTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900:ENSMUST00000102611:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.789
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.6=97.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGCAGAAGAAAAGGGCA
R:
CCTTCATGGCCTGCATGTTGA
Band lengths:
354-1928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types