RnoINT0096327 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55393986-55395746:+
Coord C1 exon
chr10:55393986-55394198
Coord A exon
chr10:55394199-55395533
Coord C2 exon
chr10:55395534-55395746
Length
1335 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TGATGTTTGCTGCGCCTTAGGTC
3' ss Score
7.62
Exon sequences
Seq C1 exon
CTGTTGGCAGAAGAGAAGGGCATCTCTGCTCGCTATGCAGAAGAACGGGACCGGGCTGAAGCTGAGGCCAGAGAGAAAGAAACCAAGGCGCTCTCCCTGGCGCGGGCCCTGGAGGAGGCCTTGGAGGCCAAGGAGGAATTCGAGAGGCAGAATAAGCAGCTTCGGGCAGACATGGAAGACCTCATGAGCTCGAAAGATGATGTGGGGAAGAAC
Seq A exon
GTAAGTCATCTGTAGTTGCAAGGACAGAAACAGCCTGGGACCATAGCAGAGCCAACTTGAGCCCTGTCCTGGAGGCAGATGTGTTCTCCCATTCACCTGCGCCGAGATCCATGTCTGCGTGCCATGCACATGCCCTATGCCCTTGAGGGCAGAGAGGGATTGGATCCCTTGGGACTAGACCTGCTGGTGGTTGTGAGCTGCCATGTGGGCTGCAAGTTGAACCCAGGTCCTCCAGAAGAGCACGCAGTGTTCTTTACTGCTGAGACCTTCTCCCCAGACCCCAGATGTGGAATTATTGCAGAACCCCTAGCAGACAGCCAGATGTTGACCCTTACCCTGGCCCTCCCTGCCCCAGTTCATCCTGGCAGAGGCACCTCTCATATCTGCATTGTCAGTGGTTACAAACCTGGATGTCCCAAGATCCCCTGGGAACTGAAGCACATTTACTCCACTCCCTGCCTGGCCTTCCTGAGACCTGAGTGCTGGCCTTCAGGGTGTCTGCAGCTGTCAGGACTTACAGTTGAGACATTTCTGTGAGCTCTCACATGTGTGCCTTCTCCAAGAGTCCCCATGCTAGTTCCTTGCCCTGTGCCCTCCCTCAGTATCTAACTAGCAGAAAGCTACAGAGTAAATTTGGACCTGCAATTCAAAGGGACATTCCCCTTGGCTCTTCTGCCAACTTCCATTATTTTGGGGTTTTGAGACAGGGCTCTTCTGTGTAGCAGCTCTGGCTGTCCTGGAGCTCACTTTGTAGAACAGGCTGGCTTTGAACTCACAGAGCCATGTAGCAGTGAAGAGAAGACTGTAGTGGTTCCCTAGTCATTTTCTCCACAGTAACTGACACTCACACTCATGGTGACTGACGAGTTACCAAACACTACTTAGGAATGGATCTTCCTAAGTTCTGCTGCTTGCCCGTGAAGCTAACGTGATTGTGAGCCCCGGACATTCGATAACACATAGGTCTGCTTCAAGAGGTTGGGCAGGTTACTTGGGACAGGAGGTGGAGGTACCCAGTGGAGCTCCAGGCTCAGAAGGCTCGTCTTTGTGGAGGGCACTGTTCAGAGAAAGGTCAGACCTTGTGGCTGTGCCCTGCTTTGCAGACTACCTCTATCCCAGGTGGCCCATGAGCCTTTCCATTGTGAGTGACTTCTAAGGCTCATGCAGCCTCACACTCTGCGGGTGATGTGACTGCTTTAGCTTCAAAGTCCCGTCATTCAAGTGGGGTGATTAAAACACGTGTGACCACAGAAGTCAGAACTGTAGGTTTAGGTCACATCTCTGATCCAAGAGCAGCAGCCTCTGCTCACCAGTCTGATGTTTGCTGCGCCTTAG
Seq C2 exon
GTCCACGAGCTGGAGAAGTCCAAGCGGGCCCTGGAGCAGCAGGTGGAGGAGATGAGGACCCAGCTGGAGGAGCTGGAGGACGAGTTGCAGGCCACTGAGGACGCCAAACTCCGCCTGGAAGTCAACATGCAGGCCATGAAGGCCCAGTTTGAGAGGGACCTGCAAACCAGAGATGAGCAGAATGAAGAGAAGAAGCGGCTGCTGCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.789
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.6=97.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCAGAAGAACGGGACC
R:
CATCTCTGGTTTGCAGGTCCC
Band lengths:
357-1692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]