GgaINT0127425 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:598953-599355:-
Coord C1 exon
chr18:599179-599355
Coord A exon
chr18:599099-599178
Coord C2 exon
chr18:598953-599098
Length
80 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
AATGATCTCCTTTGGTTTAGCTG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTGAAAAACCTCACAGAGGAGATGGCAGCCCTGGATGAGACCATTGTGAAGCTGACAAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACACTGGATGACCTGCAGGCTGAAGAGGACAAAGTCAATACGCTGACCAAAGCTAAAACCAAGCTGGAACAGCAAGTGGATGAT
Seq A exon
GTAAGCAAAATACAATCATTACAGGACAGTTGTGGAGATAAACATGGGTGACAGAGCACTAATGATCTCCTTTGGTTTAG
Seq C2 exon
CTGGAAGGGTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCCAAGAGGAAACTTGAAGGAGACCTGAAGTTGGCCCATGATAGCATAATGGACTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(43.6=100),PF0003816=Filament=PU(6.7=32.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(24.1=65.3),PF0003816=Filament=FE(16.8=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGATGAGACCATTGTG
R:
TCTTCTCTTGCTCCAGGGACC
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]