BtaINT0097446 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30237666-30238095:-
Coord C1 exon
chr19:30237919-30238095
Coord A exon
chr19:30237812-30237918
Coord C2 exon
chr19:30237666-30237811
Length
107 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GGAGATGGTACCTTTTGCAGCTG
3' ss Score
3.95
Exon sequences
Seq C1 exon
GTTAAGAACCTCACTGAAGAACTTGCCGGGTTGGATGAAACCATTGCAAAGTTAACCAGAGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAAGAGGACAAAGTCAATTCTTTGAGCAAAATCAAGAGCAAACTGGAACAGCAGGTGGATGAT
Seq A exon
GTGAGTGAAGGATGCCAATTGGGAGGCCTGGGTTGGGGCAGGAAGAGCCCCTGGGACACCCATGGTGCAAAGCATTTGTTCTTAAAAGGAGATGGTACCTTTTGCAG
Seq C2 exon
CTGGAAAGCTCCCTGGAACAAGAAAAGAAGCTCCGTGTAGACCTGGAAAGGAACAAAAGGAAGCTGGAGGGAGACCTGAAGCTCGCCCAGGAGTCCATCCTGGATCTGGAGAACGACAAGCAGCAGCTGGATGAGCGGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(28.8=93.2),PF0157614=Myosin_tail_1=FE(43.6=100),PF0003816=Filament=PU(6.6=30.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(25.6=69.4),PF0003816=Filament=FE(17.6=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGAACTTGCCGGGTTG
R:
TTCAGGTCTCCCTCCAGCTTC
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development