RnoINT0096480 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53636559-53637008:+
Coord C1 exon
chr10:53636559-53636735
Coord A exon
chr10:53636736-53636862
Coord C2 exon
chr10:53636863-53637008
Length
127 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGC
5' ss Score
4.72
3' ss Seq
GGAAATGATGCCTCTTGCAGTTG
3' ss Score
3.95
Exon sequences
Seq C1 exon
GTAAAAAACCTTACCGAAGAACTGGCAGGCCTGGATGAAACTATTGCAAAGCTAACACGGGAGAAGAAGGCCCTCCAAGAGGCCCACCAGCAGACCCTGGACGACCTCCAGGCTGAGGAAGACAAGGTCAATTCTCTGAGCAAGCTCAAGAGCAAGCTGGAGCAGCAAGTGGATGAT
Seq A exon
GTGAGCACTGGGCATCAGTCTCTGGAGTCTGGAGGCTTCAGGGCGGAAGAGCCCTGGGCAGGGGCGGGGCTGGGGTTATCCTACCGGAAATCATCTAATCCTAAAGGGGAAATGATGCCTCTTGCAG
Seq C2 exon
TTGGAGAGCTCCCTCGAACAAGAGAAGAAGCTGCGTGTGGACCTGGAAAGGAACAAGAGGAAGCTGGAGGGAGACCTGAAGCTTGCCCAAGAGTCCATATTAGATCTGGAGAACGACAAGCAACAGCTGGACGAGAGGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.7=100),PF0157614=Myosin_tail_1=FE(43.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=0.0),PF0157614=Myosin_tail_1=PD(25.4=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCGAAGAACTGGCAGGC
R:
GTCTCCCTCCAGCTTCCTCTT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]