GgaINT0127432 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:596647-597404:-
Coord C1 exon
chr18:597208-597404
Coord A exon
chr18:596831-597207
Coord C2 exon
chr18:596647-596830
Length
377 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
CTGTGCTTACAACCTCCCAGGAA
3' ss Score
6.3
Exon sequences
Seq C1 exon
GCCAAGAATGCCCTGGCCCACAGCTTGCAGTCAGCCCGCCATGACTGTGATTTGCTCCGGGAACAATATGAGGAGGAGCTTGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGCGAAGTGGCCCAGTGGAGAACCAAATATGAGACGGATGCTATTCAGCGCACAGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGGGGAAAGTGGGGAAGGCTGGCAGAAAGTAGTGGAAATTTGAAGAAATCATTGAGATACTGAAGGGCAAAAGCCAAATAGTAGTTTGGAGAGGAGTGCTATGAAGGGGAAATTTGTGCTGTTGAGACAATGGTTTCAAAAGGACAAATAGTCCACATGACAGAGAATGCAAGAGAAAGGCAATGTATGATGTGTGCAGCGAGGTGAGGGATTTCTAGACTTGAGGAAAGGAAAAGGGAATAAAGTTTGGGAAACGCTCTGCACAAGTTGCATCTGGGCAGAATACTGTGGAGTGCCTAAGTATGGTGGTGAAAGCTAGAGAAAAATCCCCACTTTGCTCCGAAAGACTGAGCTGTGCTTACAACCTCCCAG
Seq C2 exon
GAAGAAGCTGGCACAGCGCCTGCAGGATGCCGAGGAACATGTTGAAGCTGTGAATGCCAAATGCGCTTCCCTGGAAAAGACAAAGCAGAGGCTGCAGAATGAGGTGGAGGACCTGATGATTGACGTGGAGCGAGCAAATGCTGCCTGTGCAGCTCTGGACAAGAAGCAGAAGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.210
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(29.6=43.9),PF0003816=Filament=FE(21.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(20.5=100),PF045827=Reo_sigmaC=PU(35.9=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTTGCAGTCAGCCC
R:
TTCTTGTCCAGAGCTGCACAG
Band lengths:
344-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]