BtaINT0097453 @ bosTau6

Intron Retention

Gene

ENSBTAG00000011803 | MYHC-EMBRYONIC

Description

myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]

Coordinates

chr19:30235118-30235837:-

Coord C1 exon

chr19:30235641-30235837

Coord A exon

chr19:30235302-30235640

Coord C2 exon

chr19:30235118-30235301

Length

339 bp

Sequences

Splice sites

5' ss Seq

CAAGTACGC

5' ss Score

6.23

3' ss Seq

TGCTTCTCATTTGTTTTAAGGAA

3' ss Score

8.72

Exon sequences

Seq C1 exon

GCCAAGAGCGCACTGGCCCACGCCCTGCAGTCAGCCCGCCACGACTGTGACCTGCTGCGGGAACAGTACGAGGAGGAACAGGAAGCCAAGGCCGAGCTGCAGAGGGCACTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA

Seq A exon

GTACGCAACTCTGTCTTCAGAAGAACTAGCACTTCTAAATGATCAAATGACAGAGGGCACTGACATTAGCACTGCTCGAGAGTGAATGTTACCGTCTTTTAAGGCAGTTCTGTGCCAGCAGGGGACTTGTGTGAGCACATTTCATTGAGACAAACGACTGTGATCTTGGTTAGAGGCAGGCAGGCTACTGATCACTGATTTTTAGCAGACAGGAGGTTCTCCTGGGCTTATGAAAGGAAAGCTGTTTGAATCACATAGGTTAGTGATTCCAGTTAGATGAATAGTGATGTTCAAGAAGGACTGAAGCTTAAACAGCATCTGCTTCTCATTTGTTTTAAG

Seq C2 exon

GAAAAAGCTGGCTCAGCGCCTCCAGGATTCCGAGGAGCAGGTGGAGGCGGTGAACGCGAAGTGCGCGTCCCTGGAGAAGACCAAGCAGAGGCTGCAAGCGGAGGTGGAGGACCTGATGGTCGATGTGGACAGAGCCAACTCCCTGGCTGCCGCCCTGGACAAGAAGCAGAGGAATTTTGACAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000011803:ENSBTAT00000001120:32

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.455 A=NA C2=0.161

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(13.0=100),PF045827=Reo_sigmaC=PD(11.8=25.8),PF059116=DUF869=PD(20.0=30.3),PF0003816=Filament=FE(23.2=100),PF131661=AAA_13=PU(9.4=25.8)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(12.2=100),PF0003816=Filament=FE(21.8=100),PF131661=AAA_13=FE(33.7=100),PF045827=Reo_sigmaC=PU(37.9=93.5),PF152721=BBP1_C=PU(17.7=41.9)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000001120