RnoINT0096487 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53639675-53640487:+
Coord C1 exon
chr10:53639675-53639871
Coord A exon
chr10:53639872-53640303
Coord C2 exon
chr10:53640304-53640487
Length
432 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TTCTTTTCATTTTCTTGAAGAAA
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCCAAGAATGCGCTGGCCCACGCCCTGCAGTCCTCCCGCCACGACTGTGACCTGCTTCGGGAACAGTACGAGGAGGAGCAGGAAGGCAAAGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAATGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGTCTCTAATTAGAACCCTTAAGGGATCTCATGGCTTAGCACATTGGCTCTAGAGTGGCTCCGGGATGAAGCTAATGAATGTATCTGTTTTGTTACTGGAGGTTTCCCCATCAAGAGAGTCTTTAAATGTAACATTGGCTGAAATGTGAAATGTAACAGAATGAACTACTTCAGTCTAACGCTCTCCCAACTGAGCTATTTCGGCGCTGCAACAGAATGAACTACTATAGTTCATTGACATCAACTTTGATCCTGGTTAGACCTGAGAAAGGCCACTGATCACAGACTCTGAGCAGATGGGGGATTCTCTTAAGGTTTTTTCGCAGAGGCATGTGAGCCAGGCAATTAGTGTCTCCGGGGTGGTGAGCAGCGATGCTCAAGAAGATTGAAACTTAATGGCGTCGGCTTTCTTTTCATTTTCTTGAAG
Seq C2 exon
AAAAAAGCTTGCTCAGCGCCTTCAGGATTCGGAGGAGCAGGTCGAGGCTGTGAATGCAAAATGCGCTTCCTTGGAAAAGACCAAGCAGAGGCTGCAAGGGGAGGTGGAGGACTTGATGGTGGATGTGGAGAGAGCCAACTCTCTGGCTGCCGCTCTGGACAAGAAGCAGAGGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(21.0=31.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF045827=Reo_sigmaC=PU(39.2=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTCCCGCCACGAC
R:
CCTCTGCTTCTTGTCCAGAGC
Band lengths:
342-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]