GgaINT0127455 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7958677-7959185:-
Coord C1 exon
chr18:7959172-7959185
Coord A exon
chr18:7958863-7959171
Coord C2 exon
chr18:7958677-7958862
Length
309 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCTGGTTCTCTCTGCTGCAGATT
3' ss Score
10.65
Exon sequences
Seq C1 exon
ATGGTATTGCATCG
Seq A exon
GTAAGTCTGCTTTTGTGTTTTTAAATGATGCATGGCTTTTTTCCATTCCCTGATTAAAACATCTAAAACTCAGACTGCAGAGTCCATGGCTGCAAGAATCTCACAGAAACTTCTCCATTACCTGATTTTCCTGTACGGTTTGTAGGCTGCTATATCACTACTGTAGATGACCCCAGATTTTCATGTGTTGTGGATTCTTTTCCATTTGTTTTTTTGTTTGTTTTGTTTTGTTTTTTTTGCTGTTTGCTTATTTTTCCTTAATCACCAGCAGAAATGCATCCTGCTGACTCCTGGTTCTCTCTGCTGCAG
Seq C2 exon
ATTCACTTCTGTTTCATGCTCAGCTCCTTGTTAAAGCAGCCTCACATTACCAGTTTTGTGGGATTTTTCCTTCACGTCGTCTTTGGCTCACTGGGCTTCATGACGTTCTTTGAAGAAGTGCCACCATCTTTGGAATGGGTCTTTAACCTCTTCAGTCCTTACACTTTTACAGCTGGCATCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021391:ENSGALT00000034523:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(58.9=98.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]