RnoINT0010508 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98460600-98461498:-
Coord C1 exon
chr10:98461357-98461498
Coord A exon
chr10:98460786-98461356
Coord C2 exon
chr10:98460600-98460785
Length
571 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TAATTTTTTTCTCCTTTCAGATA
3' ss Score
11.53
Exon sequences
Seq C1 exon
GCTTTCCTGGGGTCTGATGTACGCTGGCTTTATCCTTGTTGTGGCTACTTTGATGTCTCTTATTGTGAAATCCACCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGTTCCTCCTGTTTCTCCTTTATGGCCTGTCTTTG
Seq A exon
GTAAGTTGGTAATTTCTTCCCTTTCCTTCCCTCCCTCCCTCCCTCTAATCAGTATTGTGTTTCTGCCTTTTCTGCTCTGTGCAGAATTTCAAAGGTATGATCCTTATAGTACATAATTGAAAGTCAATGAGATATACTTTCTAAATACTGTGTTGGTTAGCTATCAGTCCCTATTACAAATGCTGGAGACAATCAACTAACAAGAAGAAAAAGGTTTTACTCTCCTGCCCCCTTGGTTTTGGAGCCCAGGGTTGGTTGACCCTGTTGCTTTGGCCTGTGTCTGGGCAGCACATTATGTCACCAGCTCATGGTAGATCAAAGTTGCTCACATTATGACCAGGATGTCAAAAAGAGGAAGGGACTGGGCTCTTATAATCTCCTTCAGGATAAGCATCCAATGACAGGAAAATTTCCACCAAGTGGAACTTTGTGGAAGATGATATTACCTCCCAGTAGAGCCTTGGGTTGGAGATGCATGAATCTCTGGATGACATCCAAATCTGAAATTCCTTTTACTGTCCTAGTGATGATGGTCAGACTGCCACACCAGTTAATTTTTTTCTCCTTTCAG
Seq C2 exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGTTAAAGAAACCATTTCTTACTGGCTTGGCTGTCTTCCTCCTTACCGTCTTCTGGGGAAGCCTGGGATTCACAGCATTGTACAAACATCTTCCTGCTTTTATGGAATGGATATTGTGTTTTCTTAGCCCCTTTGCCTTTATTAATGGAATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCTGGGGTCTGATGTAC
R:
TGGGCCATTCCATTAATAAAGGCA
Band lengths:
327-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]