GgaINT0127522 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7959421-7960419:-
Coord C1 exon
chr18:7960319-7960419
Coord A exon
chr18:7959648-7960318
Coord C2 exon
chr18:7959421-7959647
Length
671 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GGCTGGCTTCTTTTCTTCAGATG
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATACCTGCTATGATTTCTCATCGTCCTTTTGCAAGGTTCCTTTGTACTGGTATGAGGGATTCCTGTCCGTTCAGTCCAGCATTGATGCAGCAGTCATAGAG
Seq A exon
GTATGGCCATGATGGAAGACGTGGTTTCTTTCTAAAGTTATCCATGAACTTTGCTTAAAAAAACAAACAACAACAACAACAAAAACCCCATGTGGAATAACTGTGAGCTGTTGCTGACTTAGAGATTGGAAGCCCATTTCTGGACTTAGAATTTGGAACTTACTTTGTTGCCAAACTTTTTTCCCCTTTGTTATTTGCAAGTTTATAGAAAAATTCAAAGTAAAATGAATGAAAATACCATTGCCAGAGTCTTTATCCTTGAGATTTTGTTTTTATCACATTGGTCCACTTTGAAAAATAAATGTGAAGTGTTTAGTATGGACCAAACTGTATTTTCCCGTGATAAACTCTTCCATCCATCATGAAAAGATAATCATCTCCAAGTACGGTACTTACAGAACAGTAAAGCTCCTGCCCTTTAGCTATGCTATAATTGCTTTACAACTTCTGCTCTATTCCTCTTCCATCTGCTTTGTAGGCCCTGCCTGCTCTTTCAGCTCCAATGCGACGTTAGTGTTTATTACAAAAAGATATTAAACTTTGATGGTAATTTACCGCTTTTAAACTTAACGTCGTTACTGAAAAACTAATTATTGTCAAGCCTATGAAAAGCTATTTATTGGCTGTTTCATTATGGAATATAGAATTAATGGCTGGCTTCTTTTCTTCAG
Seq C2 exon
ATGAAAATGAACCATTCTGTCTGGGAAGAGATGAAATCAATTAGTGGCATCCGTCTGCAATCACCCTTGATCAAATCCATACGTAAAGTGGGCTATATTTGGTTCACCATTTACAGCATGCTGTGTTTCTCCCCGTATATGTATTTTCTATCAGTGAAAGTTATCAGAGAGAAAAAGAAGCTCAAGGTGTTAATGAAAGCAATGGGTTTACAAGACATCGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023373:ENSGALT00000038535:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(41.9=100),PF131081=DUF3969=PU(71.8=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTATGATTTCTCATCGTCC
R:
CAGAAGGCGATGTCTTGTAAACC
Band lengths:
326-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]