GgaINT0127522 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8223930-8224928:-
Coord C1 exon
chr18:8224828-8224928
Coord A exon
chr18:8224157-8224827
Coord C2 exon
chr18:8223930-8224156
Length
671 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GGCTGGCTTCTTTTCTTCAGATG
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATACCTGCTATGATTTCTCATCGTCCTTTTGCAAGGTTCCTTTGTACTGGTATGAGGGATTCCTGTCCGTTCAGTCCAGCATTGATGCAGCAGTCATAGAG
Seq A exon
GTATGGCCATGATGGAAGACGTGGTTTCTTTCTAAAGTTATCCATGAACTTTGCTTAAAAAAACAAACAACAACAACAACAAAAACCCCATGTGGAATAACTGTGAGCTGTTGCTGACTTAGAGATTGGAAGCCCATTTCTGGACTTAGAATTTGGAACTTACTTTGTTGCCAAACTTTTTTCCCCTTTGTTATTTGCAAGTTTATAGAAAAATTCAAAGTAAAATGAATGAAAATACCATTGCCAGAGTCTTTATCCTTGAGATTTTGTTTTTATCACATTGGTCCACTTTGAAAAATAAATGTGAAGTGTTTAGTATGGACCAAACTGTATTTTCCCGTGATAAACTCTTCCATCCATCATGAAAAGATAATCATCTCCAAGTACGGTACTTACAGAACAGTAAAGCTCCTGCCCTTTAGCTATGCTATAATTGCTTTACAACTTCTGCTCTATTCCTCTTCCATCTGCTTTGTAGGCCCTGCCTGCTCTTTCAGCTCCAATGCGACGTTAGTGTTTATTACAAAAAGATATTAAACTTTGATGGTAATTTACCGCTTTTAAACTTAACGTCGTTACTGAAAAACTAATTATTGTCAAGCCTATGAAAAGCTATTTATTGGCTGTTTCATTATGGAATATAGAATTAATGGCTGGCTTCTTTTCTTCAG
Seq C2 exon
ATGAAAATGAACCATTCTGTCTGGGAAGAGATGAAATCAATTAGTGGCATCCGTCTGCAATCACCCTTGATCAAATCCATACGTAAAGTGGGCTATATTTGGTTCACCATTTACAGCATGCTGTGTTTCTCCCCGTATATGTATTTTCTATCAGTGAAAGTTATCAGAGAGAAAAAGAAGCTCAAGGTGTTAATGAAAGCAATGGGTTTACAAGACATCGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTATGATTTCTCATCGTCC
R:
CAGAAGGCGATGTCTTGTAAACC
Band lengths:
326-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]