GgaINT0127800 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:440544-441006:-
Coord C1 exon
chr18:440841-441006
Coord A exon
chr18:440669-440840
Coord C2 exon
chr18:440544-440668
Length
172 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TTTTTCACTCTTCCCTGCAGAGG
3' ss Score
11.21
Exon sequences
Seq C1 exon
ATCCTGTCGGAGTGGAAGCAGAAGTATGAGGAAACACAGACTGAACTGGAGGCCTCCCAGAAGGAGTCTCGCTCCCTCAGCACAGAGCTGTTTAAGATGAAGAATGCCTATGAGGAATCCCTGGACCACCTGGAAACACTGAAGCGTGAGAACAAGAACTTGCAGC
Seq A exon
GTAAGTCGCTCAGTCTTTCCTGCTGGCAGGGCTTTCTCAGAAGCTTTCCGGCCCACCTCTCCACCTGGGTCTGTGCCTTCAGTGGTGGGAGGAGATTTGTTACGCTGTTGTGACAGGGCCTTTCCCTGTATGCTCTATATCTGACCATGCGATTTTTCACTCTTCCCTGCAG
Seq C2 exon
AGGAGATTTCTGACCTCACGGAGCAGATTGCAGAGGGAGGAAAGGCAATTCATGAGTTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAGTCTGAAATCCAGGCTGCTCTGGAAGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.6=100),PF045827=Reo_sigmaC=FE(39.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(24.1=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTGAACTGGAGGCCTC
R:
CTCAGCTTCTTCCAGAGCAGC
Band lengths:
256-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]