MmuINT0103199 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67033141-67033520:+
Coord C1 exon
chr11:67033141-67033306
Coord A exon
chr11:67033307-67033395
Coord C2 exon
chr11:67033396-67033520
Length
89 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TATTTCCTTTTTCCTAACAGAGG
3' ss Score
9.25
Exon sequences
Seq C1 exon
ATCCTGGCAGAATGGAAACAGAAGTATGAGGAAACCCATGCTGAACTTGAAGCCTCCCAGAAGGAGTCCCGCTCTCTCAGCACAGAGCTGTTCAAGATTAAGAATGCTTATGAGGAATCTTTAGACCATCTCGAAACCTTGAAAAGGGAGAATAAGAATTTGCAAC
Seq A exon
GTGAGTGTCTCTCCCATTTTCCTTAATGAGAGATTTGAAGGAACACCCCACAATCTCTATACACATTTCTATTTCCTTTTTCCTAACAG
Seq C2 exon
AGGAGATTTCTGACCTCACTGAACAGATTGCAGAAGGAGGGAAACGCATCCATGAACTGGAGAAAATAAAGAAGCAAATTGAGCAGGAAAAATCTGAGCTCCAGGCTGCTTTAGAGGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.458
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(19.0=100),PF045827=Reo_sigmaC=FE(38.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.1=100),PF057016=WEMBL=FE(11.5=100),PF115593=ADIP=FE(38.0=100),PF057916=Bacillus_HBL=FE(42.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCTGAACTTGAAGCCT
R:
GGATGCGTTTCCCTCCTTCTG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: