GgaINT0129146 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8195948-8196434:-
Coord C1 exon
chr18:8196344-8196434
Coord A exon
chr18:8196088-8196343
Coord C2 exon
chr18:8195948-8196087
Length
256 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTTCCTTTTATTTGAACAGGAT
3' ss Score
10.23
Exon sequences
Seq C1 exon
ACCGCAAGGCTTTTATCTCACGTGGGAGGCTGAAGTGTGTGGGCTCCTCTTTGTTCTTGAAGAATAAGTGGGGGATCGGCTATCACTTAAG
Seq A exon
GTATGCACTTCAGCTGTAGTGACCACTGTCTGGGAATAGGCATGAATCCACTAATATGACTGTAAAAAAGAAAATCAAAACAGTAAAAGGAGCTGAATTCACATTCAGTTAAATTAGCTGAATATGTGATTCACTCCAGAGTAAGGAATGAAGTACAATTTGATGCATTCTAGCAAACACAGTCTTGTTTTCATTTCATTTGCTGTTTGTTTTGTTTTCAAAATTGACCATTTGCTTTTTCCTTTTATTTGAACAG
Seq C2 exon
GATCCATGTCAGTGATTCTTGTGACGTAGAGAATGTGACGTGTCTGGTTAAGCAGTATGTCCCCAAAGTCATATTCTCGGGACATGGTCAATATGAGCTGAGATATAAACTGCCATTAGAAAACGTGAATAAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGCTTTTATCTCACGTG
R:
TATTCACGTTTTCTAATGGCAGTT
Band lengths:
220-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]