GgaINT0129159 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8189138-8189702:-
Coord C1 exon
chr18:8189582-8189702
Coord A exon
chr18:8189256-8189581
Coord C2 exon
chr18:8189138-8189255
Length
326 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCCTCCTCCTTGCTTTCAGAAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
AATTCCCCCAAGAAAAGAGAACAGCCATCAGCATCCTGAGGAGCCCGAAGAGGAAGATGAAGATGTTAAAGCTGAAAGAGAAGCAGTGAAAAATGCCATAGCAGCTCCAAGCCAGGAGGAG
Seq A exon
GTAAGGCTGAGTGTGGTTCTTCTTCCTTTGCTTTATATCATTAATAAGACTGTTGGTTTAGAAAAGAAATCGCCAAGATTAATAAGGGCAAGTGAATGCTCTGGCTGCGTTATTCATTCCTCAATGGAAAAACCCAGCTCTCAAGTGGACAGAGTGGGTCCCATCAGGATAAGGAAGAAACCTTTTAAGTGGAAAATGGACAATGTTCCATGGCATCTCAAATTCTCTTTTAAAGTTTTTTGCCTTTTAAAATGGAAAAATATTACAGAAGGATGAATGCTGTTCAGTATAACGGACTGATCTTTCTTCCTCCTCCTTGCTTTCAG
Seq C2 exon
AAATCAGTTATTATTGTCAGTAATGTCTACAAGGAGTATAAAATTAAGAAAGCTGGTTCCGTTTTTAGGAAGAAGAAGAAAGTGGCCACCAAAAATATTTCCTTCTGTGTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCCCAAGAAAAGAGAACAGC
R:
ACACAGAAGGAAATATTTTTGGTGGC
Band lengths:
230-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]