GgaINT0129366 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:389830-390451:-
Coord C1 exon
chr18:390062-390451
Coord A exon
chr18:389957-390061
Coord C2 exon
chr18:389830-389956
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTCTGTATGTTGACACATAGGCA
3' ss Score
4.65
Exon sequences
Seq C1 exon
GCCCGTACTGAGGAACTGGAGGAGGAAATCGAAGCAGAGCGAACCTCTCGGGCAAAAGCAGAGAAGCACCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGAGCGCCTGGAGGAAGCAGGAGGGGCTACAGCAGCTCAGATTGATATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATCGACAACCTGCAACGAGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCGAAG
Seq A exon
GTACAGCATTACCTTATAGGCTCATTGCCTCATAGGAATTCTGGGAATTCACCCCTTTATGGGGAGTATGAATTTCTAATTCTCTTTCTGTATGTTGACACATAG
Seq C2 exon
GCAAGTCTGGAGAAGACATGCCGAGCATTGGAAGATCAGCTGAGTGAGATTAAGACAAAAGAAGAGGAGCATCAACGGATGATCAATGATGTTAATGCTCAAAGAGCTCGTCTGCAGACAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=0.814
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(17.3=100),PF0003816=Filament=FE(43.9=100),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF135141=AAA_27=FE(5.6=100),PF0003816=Filament=FE(14.3=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(25.3=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGGAGCAGATCGACAAC
R:
TCTGTCTGCAGACGAGCTCTT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]