Special

DreINT0100028 @ danRer10

Intron Retention

Gene
Description
myosin, heavy chain a [Source:ZFIN;Acc:ZDB-GENE-060531-50]
Coordinates
chr5:31652760-31653721:+
Coord C1 exon
chr5:31652760-31653149
Coord A exon
chr5:31653150-31653594
Coord C2 exon
chr5:31653595-31653721
Length
445 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
GACTAAATGTTTTTTTGCAGGCC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GCTCGCATTGAGGAACTGGAGGAAGAGATTGAGGCTGAGCGTGCTGCTCGTGCCAAGGTTGAGAAGCAGAGAGCAGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTTGAGGAGGCTGGAGGAGCCACTGCTGCTCAAATCGAGATGAATAAGAAGCGTGAAGCTGAATTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTTCAGCATGAAGCTACTGCTGCTGCCCTGCGCAAGAAGCAGGCAGACAGTGTGGCTGAGCTGGGAGAGCAAATCGACAACCTCCAGCGTGTCAAGCAGAAGCTTGAGAAAGAGAAGAGTGAATACAAAATGGAGATCGATGATCTCTCCAGCAATATGGAGGCTGTCGCCAAAGCAAAG
Seq A exon
GTTGGGAATTTTATATCTTAGGAATAGGGGTGCACCTAATTTTCATAAGACGTAAATTATTGGCTAAAATGGCATTCTTAGTTTCAGGCCAATTAAGAACCATTTTTACAATTTGCAACCATGATTGCCTGAGTTGTTTAATCTTGTATCTTCTTACGCACACAGCCATTTAAGCTGATAAATTGTGATTAAATGAATACAATGAAGTTACAAACATAAAATGTAATTGTTGATTTTTTCTTTTAAAATAAAAATATGTTTTGTTGCGTCAGTAAACATTCTGTTATACAGTTATAATTGATTTAAGAGATAAATGTTTTTAGTCATGTTTAAATTGTTAGCAAATTCTTTACCAGAAAAAGATTACAATATCAGAAAATAAGTATTTAAAAAATGCACATCTTGAAATTTATAACATATTAAATGACTAAATGTTTTTTTGCAG
Seq C2 exon
GCCAATCTTGAGAAGATGTGTCGCACACTTGAGGATCAACTTAGTGAAATAAAGTCCAAGAGTGATGAGAACCTTCGCCAGATAAATGATCTCAGTGCTCAAAGAGCAAGACTTCAAACTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095930:ENSDART00000139917:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.646 A=NA C2=0.628
Domain overlap (PFAM):

C1:
PF135141=AAA_27=FE(17.4=100),PF0003816=Filament=FE(45.4=100),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF135141=AAA_27=FE(5.7=100),PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(2.0=14.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGCTGCTCAAATCGAGA
R:
TCTGGCGAAGGTTCTCATCAC
Band lengths:
342-787
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]