HsaINT0107778 @ hg19
Intron Retention
Gene
ENSG00000141048 | MYH4
Description
NA
Coordinates
chr17:10354643-10355647:-
Coord C1 exon
chr17:10355258-10355647
Coord A exon
chr17:10354770-10355257
Coord C2 exon
chr17:10354643-10354769
Length
488 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTTC
5' ss Score
0.45
3' ss Seq
TTTTCTACCTCTCACCCCAGGCA
3' ss Score
9.56
Exon sequences
Seq C1 exon
GCCCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCCGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAGCTGGAGGAGATCAGTGAGAGGCTGGAAGAAGCCGGTGGGGCCACTTCAGCCCAGATTGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAAGAGTCCACCCTGCAGCACGAAGCCACGGCAGCTGCTCTTCGGAAGAAGCACGCAGATAGTGTGGCTGAGCTTGGGGAGCAGATTGACAGCCTTCAGCGGGTCAAGCAGAAGCTGGAGAAGGAAAAGAGTGAGCTGAAGATGGAGATCAATGACCTTGCTAGTAACATGGAGACTGTCTCCAAAGCCAAG
Seq A exon
GTCTTCATTAACTTGTGCCCTTTTCATCTTTATTTGCAACAATTCAAAATGACCAAGTTTATATATGACTATTTTTAGCCAAATTACACAAACATTAGATGGCATCTGAAGCTTAAACTTACTCCTAGTACACATTATTGTATTGAATCACTTAAGTTCTCTTAACTTCTTTGTAGAAAACACTTTAACCTTTGATACTATTACCATGAAAAAAAATGTAATTACAAAAAAGGTTTATCTAAAAACCATACTCTAAATGATGCAGAATTTAAATGATGTTCACACTTTCAAAGAGAATATAATTTTGATAATCATGTGTTCATTATTTAGCCAAATTAAATGCCTCTACTACTTTATAGCCACCATGCAAGATTGATAGAAAAGTAAATAAAAATCAGCCCCTTTCCACAGGTAGTTACAGATCTCTAAATCCCAGCCTCTAGAATAAAAATGTATTGTCTCTTCCTGTTTTCTACCTCTCACCCCAG
Seq C2 exon
GCAAACTTTGAGAAAATGTGCCGCACCCTAGAGGACCAGCTTAGTGAAATAAAAACAAAGGAAGAAGAGCAACAACGCTTAATAAATGAGTTGTCAGCCCAGAAGGCACGTTTACACACAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141048-MYH4:NM_017533:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=0.721
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGATCAGTGAGAGGC
R:
TAAGCTGGTCCTCTAGGGTGC
Band lengths:
342-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)