BtaINT0097292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30088180-30089199:-
Coord C1 exon
chr19:30088810-30089199
Coord A exon
chr19:30088307-30088809
Coord C2 exon
chr19:30088180-30088306
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTTTCTACTTCGCACCGCAGGGA
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAGATCGAGGCTGAGCGGGCCTCCCGCGCCAAAGCAGAGAAGCAGCGCTCAGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTAGAAGAAGCCGGCGGGGCCACTTCCGCCCAGATTGAGATGAACAAGAAGCGGGAGGCCGAGTTCCAGAAGATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAGGCCACGGCGGCCGCTCTTCGCAAGAAGCACGCGGACAGTGTGGCCGAGCTGGGGGAGCAGATTGACAACCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGACGACCTGGCCAGCAACATGGAGACTGTCTCCAAAGCCAAA
Seq A exon
GTATGTACTAACCTGTCCCATTTCATCTTATTTTCCATGACTCAAAATGATTGAGTTTCTATATGATCTAATCTAACTGTACAAGCCTTAGATGTTATCTCAAACGTTAAAATTATTATTAATAGACAGTACTATATTGAAGTAAATTATTTTAATCTTCCTATCTCATTCGTAGAAAAATCACTTTAAACTTTGTCATTATTACCACGAAAGAATGAAAATACAGAAAAAAAAAAAGTTATGTAAAAACCATATTCTCCATGATGCAGAATTTAAATGACATTCTAGTTTTCCAAACGACAATAATCTAACTTTTACAATAGTTCATTTATTCATTTAGCCAAAACCAGGTGCCTCTGACTTTGCATCCAAGGCATTATGCAGAGCTTTGCAGTAGATAGGAAGGTAAAGAAAACTCAGCCCCTTTGTGCAAAGAGTTACAGCTCCCCAGACTTACAAAGAGAAGCATGTTATCTTTCCCTGTTTTCTACTTCGCACCGCAG
Seq C2 exon
GGAAACCTCGAGAAAATGTGCCGTACACTAGAGGACCAACTGAGTGAAGTGAAAAGTAAGGAAGAGGAGCACCAGCGCCTAATCAATGAACTGTCAGCCCAGAAGGCACATCTACACACAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(16.2=14.6),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGGAGGAGATCAGCGA
R:
TTGGTCCTCTAGTGTACGGCA
Band lengths:
343-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development