GgaINT0129589 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10080197-10080514:+
Coord C1 exon
chr18:10080197-10080322
Coord A exon
chr18:10080323-10080406
Coord C2 exon
chr18:10080407-10080514
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GTCTGCTTAATTGATTGCAGGTT
3' ss Score
6.95
Exon sequences
Seq C1 exon
GTGGAGGTGTGGCTGAACCGCGTGCTGGACAGCATGCGCTCCACGCTGCGGCACCTGATCCCCGAGGCCGTGGCCAGCTATGAGGACAAGCCACGGGAGCAGTGGGTGTTTGACTACCCGGCACAG
Seq A exon
GTGGGGCTGCCGCAGGGCTGGGCTGGGCTGACAGGCCAGCGCCAGACCCGCTGATGGGTATTTTGTCTGCTTAATTGATTGCAG
Seq C2 exon
GTTGCTCTGACCTGCACCCAGATCTGGTGGACCACAGAAGTCGGCATGGCCTTCGCAAGGCTGGAGGAGGGCTATGAAAATGCAATTAAGGACTACAACAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGTGGCTGAACC
R:
CATGCCGACTTCTGTGGTCC
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]