HsaINT0049536 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76498673-76499093:-
Coord C1 exon
chr17:76498968-76499093
Coord A exon
chr17:76498781-76498967
Coord C2 exon
chr17:76498673-76498780
Length
187 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
TGGGGGGTATGTACTTTCAGGTG
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGCTCTACCCTCCGGCACGAAATCCCAGAGGCCGTGGTGACCTACGAAGAGAAGCCGAGGGAGCAGTGGATCCTGGACTACCCAGCCCAG
Seq A exon
GTCTGAGGCGGGTGGGGGCTCGGCGGCGCCTCGTGGCTGAGATAAGGGGCGAGTTTCTTTGCGTTCATGGGCTCCGCTGTTAACTGTGGTCCCCTGGAAAACCATCTAAGCTTTCAGCAGGAATGTCTGCGTTAGCAGGCGCCAGCGATCGCTCACTGCGTGGGCAATGGGGGGTATGTACTTTCAG
Seq C2 exon
GTGGCCCTGACTTGCACCCAGATCTGGTGGACGACCGAGGTGGGCCTGGCATTTGCCAGGCTGGAGGAAGGCTATGAAAACGCTATCAGAGATTATAACAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGGCTGAATCGAGTGC
R:
GCTTTTTGTTATAATCTCTGATAGCG
Band lengths:
228-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)