HsaINT0049536 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78502591-78503011:-
Coord C1 exon
chr17:78502886-78503011
Coord A exon
chr17:78502699-78502885
Coord C2 exon
chr17:78502591-78502698
Length
187 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
TGGGGGGTATGTACTTTCAGGTG
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGCTCTACCCTCCGGCACGAAATCCCAGAGGCCGTGGTGACCTACGAAGAGAAGCCGAGGGAGCAGTGGATCCTGGACTACCCAGCCCAG
Seq A exon
GTCTGAGGCGGGTGGGGGCTCGGCGGCGCCTCGTGGCTGAGATAAGGGGCGAGTTTCTTTGCGTTCATGGGCTCCGCTGTTAACTGTGGTCCCCTGGAAAACCATCTAAGCTTTCAGCAGGAATGTCTGCGTTAGCAGGCGCCAGCGATCGCTCACTGCGTGGGCAATGGGGGGTATGTACTTTCAG
Seq C2 exon
GTGGCCCTGACTTGCACCCAGATCTGGTGGACGACCGAGGTGGGCCTGGCATTTGCCAGGCTGGAGGAAGGCTATGAAAACGCTATCAGAGATTATAACAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(30.7=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGGCTGAATCGAGTGC
R:
GCTTTTTGTTATAATCTCTGATAGCG
Band lengths:
228-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development