MmuINT0050752 @ mm9

Intron Retention

Gene

ENSMUSG00000033987 | Dnahc17

Description

dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]

Coordinates

chr11:117952030-117952833:-

Coord C1 exon

chr11:117952708-117952833

Coord A exon

chr11:117952117-117952707

Coord C2 exon

chr11:117952030-117952116

Length

591 bp

Sequences

Splice sites

5' ss Seq

CAGGTCTGG

5' ss Score

5.06

3' ss Seq

TGGCGCTGACATGCACGCAGATC

3' ss Score

4.47

Exon sequences

Seq C1 exon

GTGGAAGTGTGGCTGAATCGCGTGCTGGACCGAATGCGCGCCACGTTGCGCCACGAAATTCCAGAAGCCGTGGTGACTTACGAGGAGAAACCGAGGGAACAATGGATCTTTGACTACCCGGCCCAG

Seq A exon

GTCTGGAATGGATGCGGGCCCACTGCAGTGTGGCTCTGGGCCCTGGGTCATGCTCTTGTCTGTTGGGAATGGGGTTAACTGTATAATGCAAGCTCATTTAAAAGAAATTTCCCTTTATTTTATGTGTATGGGTGTTTTGCCTGTGTGTATATATGTGTACCACGTGTGCAATGCCCACAGTGCCCACTAGAGGGCGAAAGATCCCCAGGAACTGAAATTAAAGATGGTTGTGCGCATCCACGAGGGTAGAGTAGGATGGGGTGGGGGGAAGTAAACCCATGTCCTCTGGAAAAGCAGCCAGTGCTCTTAACCACAGAGCTGTCTGTCCAGCCTCGTGGCCTTGTCTTTTCTTTTTTCTGGGGGTGTAGATGAAAGTGGGGGTTCAAGACGGTTTCTCTGTGTAGCCCTGGCTTTCCCAGAACTCGTTCAGTAGACCAGGCTGGCCTCAAACTAAAGAGATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACACCTGGCTATGACCTCGTCTTACTGTCCATAAAGAACAGTTTCTTCTGGGTGGTTTCCAGGTGGCGCTGACATGCACGCAG

Seq C2 exon

ATCTGGTGGACGACGGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGCTACGAAAACGCCATCAAAGACTACAACAAAAAGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000033987-Dnahc17:NM_001167746:32

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available