GgaINT0129724 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7949788-7950320:-
Coord C1 exon
chr18:7950207-7950320
Coord A exon
chr18:7949885-7950206
Coord C2 exon
chr18:7949788-7949884
Length
322 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTCTCCCCTTTCCATCACAGATA
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCAGAAGACCCAGAACTAGGCCGTGGTATTTTTTTTTTCTGTCTCACTTACATGCTGATCTTGGCTGCTGGTTTGCCTCCTCAATTTGCAGTGAGCAGCGTGGAGGATTACAAG
Seq A exon
GTAGAAAGCATGCACTGAAAGTGGTCTTGCATGAGGAGAGGTGAATGGAAACACAGTGTCCCTGTAGAGACAAATAGTTGAACTATTTGGATGTTATATTAATAAACACTTCGGAGTCAGGAAGATTTTTTTTTCATTTTTCCTTGAAAATGATATGCTCTTTAGCAACGGTTGGACTAAGATAGAATTAAAGGATAAATTTGGAAGAGAGAGGGAGGCTCAGCTGGGAGGGAGGAGCAAAGGCAATGGAGAAGGATGAGGAGGAGTGGAAACGGCATTTAGCACTCTGCTGAATCTCCTCCTTCTCCCCTTTCCATCACAG
Seq C2 exon
ATAAAGGCTCATGCCCAGCTACGGGTCTCGGGGCTCTTCCCCTCAGCATACTGGTGTGGGCAGGCACTGGTGGACGTCCCACTCTTCTGGGCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393:ENSGALT00000006911:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(15.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCCAGAACTAGGCCG
R:
TCAGGGCCCAGAAGAGTGG
Band lengths:
209-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]