GgaINT0129724 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8214223-8214829:-
Coord C1 exon
chr18:8214716-8214829
Coord A exon
chr18:8214394-8214715
Coord C2 exon
chr18:8214223-8214393
Length
322 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTCTCCCCTTTCCATCACAGATA
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCAGAAGACCCAGAACTAGGCCGTGGTATTTTTTTTTTCTGTCTCACTTACATGCTGATCTTGGCTGCTGGTTTGCCTCCTCAATTTGCAGTGAGCAGCGTGGAGGATTACAAG
Seq A exon
GTAGAAAGCATGCACTGAAAGTGGTCTTGCATGAGGAGAGGTGAATGGAAACACAGTGTCCCTGTAGAGACAAATAGTTGAACTATTTGGATGTTATATTAATAAACACTTCGGAGTCAGGAAGATTTTTTTTTCATTTTTCCTTGAAAATGATATGCTCTTTAGCAACGGTTGGACTAAGATAGAATTAAAGGATAAATTTGGAAGAGAGAGGGAGGCTCAGCTGGGAGGGAGGAGCAAAGGCAATGGAGAAGGATGAGGAGGAGTGGAAACGGCATTTAGCACTCTGCTGAATCTCCTCCTTCTCCCCTTTCCATCACAG
Seq C2 exon
ATAAAGGCTCATGCCCAGCTACGGGTCTCGGGGCTCTTCCCCTCAGCATACTGGTGTGGGCAGGCACTGGTGGACGTCCCACTCTTCTGGGCCCTGATGTGCCTCATGTTCGTGGTCGTGCTGCTCTTCAACCGCATCTGCCCCATGCAGGCCTTCATCATCCTGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCCAGAACTAGGCCG
R:
CAAGGGCAGGATGATGAAGGC
Band lengths:
283-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]